HBV Target gene Detail Information

> SND1 Gene Search Result


Gene Information
Gene Name SND1
Gene ID 27044
Gene Full Name staphylococcal nuclease and tudor domain containing 1
Gene Alias TDRD11|TSN|Tudor-SN|p100
Transcripts ENSG00000197157
Virus HBV
Gene Type protein-coding
HPA Location Info Cytosol;
Membrane Info Cancer-related genes, Enzymes, Plasma proteins, Predicted intracellular proteins
Uniport_ID Q7KZF4
HGNC ID HGNC:30646
OMIM ID 602181
Summary This gene encodes a transcriptional co-activator that interacts with the acidic domain of Epstein-Barr virus nuclear antigen 2 (EBNA 2), a transcriptional activator that is required for B-lymphocyte transformation. Other transcription factors that interact with this protein are signal transducers and activators of transcription, STATs. This protein is also thought to be essential for normal cell growth. A similar protein in mammals and other organisms is a component of the RNA-induced silencing complex (RISC). [provided by RefSeq, Jul 2016]
Target gene [SND1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1002999 chr7 176 1 0 177 View
1003151 chr7 159 1 0 160 View
1004913 chr7 1 18 47 66 View
1009477 chr7 9 6 0 15 View
1009502 chr7 9 6 0 15 View
1009509 chr7 9 6 0 15 View
1016684 chr7 1 0 0 1 View
1021201 chr7 9 6 0 15 View
1041554 chr7 64 4 0 68 View
1043267 chr7 11 8 0 19 View

Target gene [SND1] related to Omics data
Data ID Experiment type Sample number Platform
GSE252863 scRNA-seq 10 Illumina HiSeq 2500 (Homo sapiens)
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
GSE247322 scRNA-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - SND1 peak across samples

Peak Plot

> Dataset: GSE68402 - SND1 peak across samples

Peak Plot

> Dataset: GSE270130 - SND1 peak across samples

Peak Plot

> Dataset: GSE100400 - SND1 peak across samples

Peak Plot

> Dataset: GSE131257 - SND1 peak across samples

Peak Plot