HTLV1 Target gene Detail Information

> SNTG1 Gene Search Result


Gene Information
Gene Name SNTG1
Gene ID 54212
Gene Full Name syntrophin gamma 1
Gene Alias G1SYN|SYN4
Transcripts ENSG00000147481
Virus HTLV1
Gene Type protein-coding
HPA Location Info
Membrane Info Plasma proteins, Predicted intracellular proteins
Uniport_ID Q9NSN8
HGNC ID HGNC:13740
OMIM ID 608714
Summary The protein encoded by this gene is a member of the syntrophin family. Syntrophins are cytoplasmic peripheral membrane proteins that typically contain 2 pleckstrin homology (PH) domains, a PDZ domain that bisects the first PH domain, and a C-terminal domain that mediates dystrophin binding. This family member plays a role in mediating gamma-enolase trafficking to the plasma membrane and in enhancing its neurotrophic activity. Mutations in this gene are associated with idiopathic scoliosis. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Mar 2016]
Target gene [SNTG1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6013015 chr8 19 1 0 20 View
6017519 chr8 1 0 9 10 View
6018773 chr8 2 6 1 9 View
6027174 chr8 2 0 0 2 View
6027965 chr8 1 0 0 1 View
6027984 chr8 0 0 1 1 View
6028236 chr8 1 0 0 1 View
6029758 chr8 0 1 0 1 View
6030580 chr8 0 0 0 0 View
6031080 chr8 0 0 0 0 View
6031762 chr8 0 0 0 0 View
6032027 chr8 0 0 0 0 View

Target gene [SNTG1] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE19080 Expression array 38 Homo sapiens 3K Immunoarray2 HTLV-1 JH
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SNTG1 peak across samples

Peak Plot