HBV Target gene Detail Information

> SOX5 Gene Search Result


Gene Information
Gene Name SOX5
Gene ID 6660
Gene Full Name SRY-box transcription factor 5
Gene Alias L-SOX5|L-SOX5B|L-SOX5F|LAMSHF
Transcripts ENSG00000134532
Virus HBV
Gene Type protein-coding
HPA Location Info Nucleoplasm;
Membrane Info Disease related genes, Human disease related genes, Predicted intracellular proteins, Transcription factors
Uniport_ID P35711
HGNC ID HGNC:11201
OMIM ID 604975
Summary This gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional regulator after forming a protein complex with other proteins. The encoded protein may play a role in chondrogenesis. A pseudogene of this gene is located on chromosome 8. Multiple transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]
Target gene [SOX5] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1002930 chr12 70 61 57 188 View
1003297 chr12 103 25 19 147 View
1005246 chr12 45 11 2 58 View
1005265 chr12 6 39 12 57 View
1006806 chr12 27 7 0 34 View
1007095 chr12 10 11 9 30 View
1007096 chr12 10 11 9 30 View
1007136 chr12 15 14 1 30 View
1008153 chr12 18 4 0 22 View
1008691 chr12 12 7 0 19 View
1008715 chr12 12 7 0 19 View
1009371 chr12 15 1 0 16 View
1011479 chr12 5 4 0 9 View
1013415 chr12 5 0 0 5 View
1014339 chr12 2 1 0 3 View
1014948 chr12 2 1 0 3 View
1015362 chr12 1 1 0 2 View
1015882 chr12 2 0 0 2 View
1019210 chr12 0 0 0 0 View
1019598 chr12 0 0 0 0 View
1019860 chr12 0 0 0 0 View
1020037 chr12 0 0 0 0 View
1020307 chr12 6 30 80 116 View
1020818 chr12 12 7 0 19 View
1041063 chr12 3 0 0 3 View
1041957 chr12 24 9 0 33 View
1041958 chr12 2 1 0 3 View

Target gene [SOX5] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
S
  GSE247322 		scRNA-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE64877 		Chip-seq 2 Illumina Genome Analyzer (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
E
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE100400 - SOX5 expression across samples

Volcano Plot

Bar Plot