HTLV1 Target gene Detail Information

> TNPO1 Gene Search Result


Gene Information
Gene Name TNPO1
Gene ID 3842
Gene Full Name transportin 1
Gene Alias IPO2|KPNB2|MIP|MIP1|TRN
Transcripts ENSG00000083312
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm;Nucleoli, Cytosol, Cytoplasmic bodies;
Membrane Info Plasma proteins, Predicted intracellular proteins, Transporters
Uniport_ID Q92973
HGNC ID HGNC:6401
OMIM ID 602901
Summary This gene encodes the beta subunit of the karyopherin receptor complex which interacts with nuclear localization signals to target nuclear proteins to the nucleus. The karyopherin receptor complex is a heterodimer of an alpha subunit which recognizes the nuclear localization signal and a beta subunit which docks the complex at nucleoporins. Alternate splicing of this gene results in several transcript variants encoding different proteins. [provided by RefSeq, Jun 2018]
Target gene [TNPO1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6006374 chr5 64 6 0 70 View
6015331 chr5 11 3 0 14 View

Target gene [TNPO1] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE19080 Expression array 38 Homo sapiens 3K Immunoarray2 HTLV-1 JH
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - TNPO1 peak across samples

Peak Plot