HPV Target gene Detail Information

> TTC6 Gene Search Result


Gene Information
Gene Name TTC6
Gene ID 319089
Gene Full Name tetratricopeptide repeat domain 6
Gene Alias C14orf25|NCRNA00291
Transcripts ENSG00000139865
Virus HPV
Gene Type protein-coding
HPA Location Info Centrosome;Basal body;
Membrane Info Predicted intracellular proteins
Uniport_ID Q86TZ1
HGNC ID HGNC:19739
OMIM ID 620954
Target gene [TTC6] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5000194 chr14 146 154 363 663 View
5000374 chr14 154 38 63 255 View
5000400 chr14 48 181 3 232 View
5000620 chr14 96 20 1 117 View
5000929 chr14 62 5 0 67 View
5001050 chr14 55 0 0 55 View
5001854 chr14 20 1 0 21 View
5002183 chr14 14 0 0 14 View
5012778 chr14 579 611 51 1241 View
5014997 chr14 112 44 3 159 View

Target gene [TTC6] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048
Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026
ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - TTC6 peak across samples

Peak Plot


> Dataset: GSE143026 - TTC6 peak across samples

Peak Plot