HPV Target gene Detail Information

> TVP23C-CDRT4 Gene Search Result


Gene Information
Gene Name TVP23C-CDRT4
Gene ID 100533496
Gene Full Name TVP23C-CDRT4 readthrough
Gene Alias FAM18B2|FAM18B2-CDRT4|TVP23C
Transcripts ENSG00000259024
Virus HPV
Gene Type protein-coding
HPA Location Info Golgi apparatus;
Membrane Info Predicted intracellular proteins, Predicted membrane proteins
HGNC ID HGNC:42961
Summary This locus represents naturally occurring readthrough transcription between the neighboring TVP23C (trans-golgi network vesicle protein 23 homolog) and CDRT4 (CMT1A duplicated region transcript 4) genes on chromosome 17. Alternative splicing results in multiple transcript variants, one of which encodes a protein that shares sequence identity with the upstream gene product, but its C-terminus is distinct due to frameshifts relative to the downstream gene. [provided by RefSeq, Apr 2014]
Target gene [TVP23C-CDRT4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5003303 chr17 3 1 0 4 View

Target gene [TVP23C-CDRT4] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - TVP23C-CDRT4 peak across samples

Peak Plot