HPV Target gene Detail Information

> BRINP1 Gene Search Result


Gene Information
Gene Name BRINP1
Gene ID 1620
Gene Full Name BMP/retinoic acid inducible neural specific 1
Gene Alias DBC1|DBCCR1|FAM5A
Transcripts ENSG00000078725
Virus HPV
Gene Type protein-coding
HPA Location Info Microtubules;Intracellular and membrane;
Membrane Info Predicted intracellular proteins, Transporters
Uniport_ID O60477
HGNC ID HGNC:2687
OMIM ID 602865
Summary This gene is located within a chromosomal region that shows loss of heterozygosity in some bladder cancers. It contains a 5' CpG island that may be a frequent target of hypermethylation, and it may undergo hypermethylation-based silencing in some bladder cancers. [provided by RefSeq, Jul 2008]
Target gene [BRINP1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5004154 chr9 0 0 1 1 View
5005256 chr9 1 2 26 29 View
5010941 chr9 22 18 12 52 View

Target gene [BRINP1] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
C
  GSE143026
ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - BRINP1 peak across samples

Peak Plot