HPV Target gene Detail Information

> BRINP3 Gene Search Result


Gene Information
Gene Name BRINP3
Gene ID 339479
Gene Full Name BMP/retinoic acid inducible neural specific 3
Gene Alias DBCCR1L|DBCCR1L1|FAM5C
Transcripts ENSG00000162670
Virus HPV
Gene Type protein-coding
HPA Location Info Secreted in other tissues;
Membrane Info Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID Q76B58
HGNC ID HGNC:22393
OMIM ID 618390
Summary This gene is overexpressed in pituitary tumors but is underexpressed in tongue squamous cell carcinomas, ulcerative colitis, and peri-implantitis. Polymorphisms that increase expression of this gene have been shown to increase vascular inflammation, and an association of this gene with myocardial infarction has been demonstrated. Finally, hypermethylation of this gene may find usefulness as a biomarker for gastric cancer. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2015]
Target gene [BRINP3] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5006954 chr1 2 18 2 22 View
5007846 chr1 0 0 0 0 View
5008667 chr1 0 0 0 0 View
5009476 chr1 9 9 2 20 View

Target gene [BRINP3] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - BRINP3 peak across samples

Peak Plot