HPV Target gene Detail Information

> CASC15 Gene Search Result


Gene Information
Gene Name CASC15
Gene ID 401237
Gene Full Name cancer susceptibility 15
Gene Alias CANT|LINC00340|lnc-SOX4-1
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:28245
OMIM ID 616610
Summary This gene produces a long non-coding RNA that may regulate cell proliferation. This RNA is upregulated in hepatocellular carcinoma, where it is thought to function as an oncogene. However, some splice variants of this gene may function as a tumor suppressor in neuroblastoma and other tumor types. Circular RNA variants were observed at this gene. [provided by RefSeq, Dec 2017]
Target gene [CASC15] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5009123 chr6 4 0 0 4 View
5010017 chr6 6 6 0 12 View
5016106 chr6 8 1 0 9 View
5016107 chr6 2 1 1 4 View
5016108 chr6 425 89 27 541 View
5016109 chr6 234 19 45 298 View
5016110 chr6 4 1 0 5 View
5016111 chr6 8 2 0 10 View
5016112 chr6 1 0 0 1 View
5016113 chr6 23 5 1 29 View
5016114 chr6 15 0 0 15 View
5016115 chr6 5 1 0 6 View

Target gene [CASC15] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE226620 scRNA-seq 30 HiSeq X Ten (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
S
  GSE164690 		scRNA-seq 51 Illumina NextSeq 500 (Homo sapiens)
GSE138080 Expression array 35 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
E
  TCGA_CESC 		DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: TCGA_CESC - CASC15 expression across samples

Volcano Plot

Bar Plot