HPV Target gene Detail Information

> CCDC171 Gene Search Result


Gene Information
Gene Name CCDC171
Gene ID 203238
Gene Full Name coiled-coil domain containing 171
Gene Alias C9orf93|bA536D16.1|bA778P13.1
Transcripts ENSG00000164989
Virus HPV
Gene Type protein-coding
HPA Location Info Nucleoplasm;Nucleoli;
Membrane Info Predicted intracellular proteins
Uniport_ID Q6TFL3
HGNC ID HGNC:29828
Target gene [CCDC171] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5009672 chr9 1 0 0 1 View
5010030 chr9 0 12 0 12 View
5010578 chr9 0 0 0 0 View
5011853 chr9 1 0 0 1 View
5016448 chr9 16 3 0 19 View

Target gene [CCDC171] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE138080 Expression array 35 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - CCDC171 peak across samples

Peak Plot

> Dataset: GSE143026 - CCDC171 peak across samples

Peak Plot