HPV Target gene Detail Information

> EFCAB13 Gene Search Result


Gene Information
Gene Name EFCAB13
Gene ID 124989
Gene Full Name EF-hand calcium binding domain 13
Gene Alias C17orf57
Transcripts ENSG00000178852
Virus HPV
Gene Type protein-coding
HPA Location Info Nucleoplasm, Cytosol;Nuclear speckles;
Membrane Info Predicted intracellular proteins
Uniport_ID Q8IY85
HGNC ID HGNC:26864
Target gene [EFCAB13] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5009078 chr17 8 0 0 8 View

Target gene [EFCAB13] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - EFCAB13 peak across samples

Peak Plot