HPV Target gene Detail Information

> FOXD2-AS1 Gene Search Result


Gene Information
Gene Name FOXD2-AS1
Gene ID 84793
Gene Full Name FOXD2 adjacent opposite strand RNA 1
Gene Alias -
Transcripts ENSG00000237424
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:44256
lncRNASNP2 ID FOXD2-AS1
Target gene [FOXD2-AS1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5016944 chr1 246 88 212 546 View
5016945 chr1 231 82 178 491 View
5016946 chr1 56 8 1 65 View
5016947 chr1 55 8 2 65 View
5016948 chr1 108 9 4 121 View

Target gene [FOXD2-AS1] related to Omics data
Data ID Experiment type Sample number Platform
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE143026 ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
E
  TCGA_CESC 		DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: TCGA_CESC - FOXD2-AS1 expression across samples

Volcano Plot

Bar Plot