HPV Target gene Detail Information

> GABRG1 Gene Search Result


Gene Information
Gene Name GABRG1
Gene ID 2565
Gene Full Name gamma-aminobutyric acid type A receptor subunit gamma1
Gene Alias -
Transcripts ENSG00000163285
Virus HPV
Gene Type protein-coding
HPA Location Info Plasma membrane;
Membrane Info FDA approved drug targets, Predicted membrane proteins
Uniport_ID Q8N1C3
HGNC ID HGNC:4086
OMIM ID 137166
Summary The protein encoded by this gene belongs to the ligand-gated ionic channel family. It is an integral membrane protein and plays an important role in inhibiting neurotransmission by binding to the benzodiazepine receptor and opening an integral chloride channel. This gene is clustered with three other family members on chromosome 4. [provided by RefSeq, Jul 2008]
Target gene [GABRG1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5004837 chr4 1 0 0 1 View
5005163 chr4 5 10 17 32 View
5008677 chr4 0 1 0 1 View
5011286 chr4 16 4 1 21 View

Target gene [GABRG1] related to Omics data
Data ID Experiment type Sample number Platform
M
  GSE169622 		Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
M
  TCGA_CESC 		DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE143026 - GABRG1 peak across samples

Peak Plot