HPV Target gene Detail Information

> GRIK4 Gene Search Result


Gene Information
Gene Name GRIK4
Gene ID 2900
Gene Full Name glutamate ionotropic receptor kainate type subunit 4
Gene Alias EAA1|GRIK|GluK4|GluK4-2|KA1
Transcripts ENSG00000149403
Virus HPV
Gene Type protein-coding
HPA Location Info
Membrane Info FDA approved drug targets, Predicted membrane proteins, Transporters
Uniport_ID Q16099
HGNC ID HGNC:4582
OMIM ID 600282
Summary This gene encodes a protein that belongs to the glutamate-gated ionic channel family. Glutamate functions as the major excitatory neurotransmitter in the central nervous system through activation of ligand-gated ion channels and G protein-coupled membrane receptors. The protein encoded by this gene forms functional heteromeric kainate-preferring ionic channels with the subunits encoded by related gene family members. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2013]
Target gene [GRIK4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5012592 chr11 5 0 0 5 View
5012593 chr11 6 4 0 10 View
5012594 chr11 127 141 87 355 View
5012595 chr11 38 6 27 71 View
5012596 chr11 38 6 27 71 View
5012597 chr11 39 9 19 67 View

Target gene [GRIK4] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
E
  TCGA_CESC 		DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: TCGA_CESC - GRIK4 expression across samples

Volcano Plot

Bar Plot