HPV Target gene Detail Information

> IRX1 Gene Search Result


Gene Information
Gene Name IRX1
Gene ID 79192
Gene Full Name iroquois homeobox 1
Gene Alias IRX-5|IRXA1
Transcripts ENSG00000170549
Virus HPV
Gene Type protein-coding
HPA Location Info Golgi apparatus;Nucleoplasm;
Membrane Info Plasma proteins, Predicted intracellular proteins, Transcription factors
Uniport_ID P78414
HGNC ID HGNC:14358
OMIM ID 606197
Summary This gene encodes a member of the Iroquois homeobox protein family. Homeobox genes in this family are involved in pattern formation in the embryo. The gene product has been identified as a tumor suppressor in gastric (PMID: 21602894, 20440264) and head and neck cancers (PMID: 18559491). A pseudogene of this gene is located on chromosome 13. [provided by RefSeq, Dec 2011]
Target gene [IRX1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5009868 chr5 1 0 0 1 View
5009869 chr5 7 18 13 38 View
5017664 chr5 1 0 25 26 View
5017665 chr5 11 25 13 49 View
5017666 chr5 5 2 0 7 View
5017667 chr5 1 1 8 10 View
5017668 chr5 145 24 20 189 View
5017669 chr5 1 0 0 1 View
5017670 chr5 19 2 0 21 View
5017671 chr5 14 0 0 14 View
5017672 chr5 1 0 0 1 View

Target gene [IRX1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
M
  GSE169622 		Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE183048 - IRX1 peak across samples

Peak Plot

> Dataset: GSE143026 - IRX1 peak across samples

Peak Plot