HPV Target gene Detail Information

> LRFN5 Gene Search Result


Gene Information
Gene Name LRFN5
Gene ID 145581
Gene Full Name leucine rich repeat and fibronectin type III domain containing 5
Gene Alias C14orf146|FIGLER8|SALM5
Transcripts ENSG00000165379
Virus HPV
Gene Type protein-coding
HPA Location Info Intracellular and membrane;
Membrane Info Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q96NI6
HGNC ID HGNC:20360
OMIM ID 612811
Summary This gene encodes a protein that belongs to the leucine-rich repeat and fibronectin type III domain-containing family of proteins. A similar protein in mouse, a glycosylated transmembrane protein, is thought to function in presynaptic differentiation. [provided by RefSeq, Sep 2016]
Target gene [LRFN5] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5005609 chr14 2 0 0 2 View
5006356 chr14 14 2 6 22 View
5008701 chr14 4 3 0 7 View
5009706 chr14 10 5 1 16 View
5010018 chr14 0 4 0 4 View

Target gene [LRFN5] related to Omics data
Data ID Experiment type Sample number Platform
M
  GSE169622 		Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
M
  TCGA_CESC 		DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE143026 - LRFN5 peak across samples

Peak Plot