HPV Target gene Detail Information

> NAMA Gene Search Result


Gene Information
Gene Name NAMA
Gene ID 100996569
Gene Full Name non-protein coding RNA, associated with MAP kinase pathway and growth arrest
Gene Alias STX17-AS1|STX17-DT
Transcripts ENSG00000271086
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:42408
OMIM ID 620412
Target gene [NAMA] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5001540 chr9 22 4 3 29 View
5016468 chr9 1 0 0 1 View
5016469 chr9 557 44 0 601 View
5016470 chr9 68 3 2 73 View
5016471 chr9 53 3 4 60 View
5016472 chr9 39 73 2 114 View
5016473 chr9 2 0 0 2 View
5016474 chr9 5 0 1 6 View
5016475 chr9 7 4 15 26 View
5016476 chr9 7 0 0 7 View
5016477 chr9 19 72 15 106 View
5016478 chr9 2 3 2 7 View
5016479 chr9 1 5 2 8 View
5016480 chr9 3 8 0 11 View
5017878 chr9 2 0 0 2 View
5017879 chr9 1436 1096 1109 3641 View

Target gene [NAMA] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - NAMA peak across samples

Peak Plot

> Dataset: GSE143026 - NAMA peak across samples

Peak Plot