HPV Target gene Detail Information

> PAX8-AS1 Gene Search Result


Gene Information
Gene Name PAX8-AS1
Gene ID 654433
Gene Full Name PAX8 antisense RNA 1
Gene Alias -
Transcripts ENSG00000189223
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:49271
lncRNASNP2 ID PAX8-AS1
Target gene [PAX8-AS1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5017349 chr2 26 4 0 30 View
5017350 chr2 32 88 89 209 View
5017351 chr2 8 2 0 10 View
5017352 chr2 113 49 52 214 View
5017353 chr2 109 46 56 211 View
5017354 chr2 108 46 58 212 View
5017355 chr2 125 7 0 132 View
5017356 chr2 57 4 0 61 View
5017357 chr2 52 5 0 57 View
5017358 chr2 84 0 0 84 View
5017359 chr2 48 4 0 52 View
5017360 chr2 8 3 0 11 View
5017361 chr2 16 1 0 17 View
5017362 chr2 21 3 0 24 View
5017363 chr2 13 15 4 32 View
5017364 chr2 10 2 2 14 View
5017365 chr2 9 13 0 22 View
5017366 chr2 8 11 0 19 View
5017367 chr2 8 12 0 20 View
5017368 chr2 8 12 0 20 View
5017369 chr2 19 15 3 37 View
5017370 chr2 16 12 1 29 View
5017371 chr2 16 13 1 30 View
5017372 chr2 16 13 1 30 View
5017373 chr2 17 12 2 31 View
5017374 chr2 14 2 3 19 View
5017375 chr2 14 0 0 14 View
5017376 chr2 12 0 0 12 View
5017377 chr2 13 1 0 14 View
5017378 chr2 14 2 0 16 View
5017379 chr2 14 3 0 17 View

Target gene [PAX8-AS1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE138080 Expression array 35 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - PAX8-AS1 peak across samples

Peak Plot

> Dataset: GSE143026 - PAX8-AS1 peak across samples

Peak Plot