HPV Target gene Detail Information

> PCBP3 Gene Search Result


Gene Information
Gene Name PCBP3
Gene ID 54039
Gene Full Name poly(rC) binding protein 3
Gene Alias ALPHA-CP3|PCBP3-OT1|PCBP3OT
Transcripts ENSG00000183570
Virus HPV
Gene Type protein-coding
HPA Location Info Nucleoplasm, Mitochondria;Vesicles;
Membrane Info Plasma proteins, Predicted intracellular proteins
Uniport_ID P57721
HGNC ID HGNC:8651
OMIM ID 608502
Summary This gene encodes a member of the KH-domain protein subfamily. Proteins of this subfamily, also referred to as alpha-CPs, bind to RNA with a specificity for C-rich pyrimidine regions. Alpha-CPs play important roles in post-transcriptional activities and have different cellular distributions. The protein encoded by this gene lacks the nuclear localization signals found in other subfamily members. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jan 2017]
Target gene [PCBP3] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5009038 chr21 9 0 0 9 View
5009083 chr21 259 196 5 460 View
5009084 chr21 102 27 3 132 View
5009085 chr21 15 0 0 15 View
5009115 chr21 9 0 0 9 View
5009438 chr21 101 38 188 327 View
5015723 chr21 9 1 0 10 View
5015724 chr21 13 0 1 14 View

Target gene [PCBP3] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - PCBP3 peak across samples

Peak Plot

> Dataset: GSE143026 - PCBP3 peak across samples

Peak Plot