HPV Target gene Detail Information

> PDZRN4 Gene Search Result


Gene Information
Gene Name PDZRN4
Gene ID 29951
Gene Full Name PDZ domain containing ring finger 4
Gene Alias LNX4|SAMCAP3L
Transcripts ENSG00000165966
Virus HPV
Gene Type protein-coding
HPA Location Info Mitochondria;
Membrane Info Predicted intracellular proteins
Uniport_ID Q6ZMN7
HGNC ID HGNC:30552
OMIM ID 609730
Summary Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [PDZRN4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5009076 chr12 3 3 0 6 View
5010695 chr12 50 30 120 200 View
5011966 chr12 24 2 7 33 View

Target gene [PDZRN4] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
E
  GSE140662 		Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
E
 
M
  TCGA_CESC 		DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE140662 - PDZRN4 expression across samples

Volcano Plot

Bar Plot

> Dataset: TCGA_CESC - PDZRN4 expression across samples

Volcano Plot

Bar Plot