HPV Target gene Detail Information

> PSG4 Gene Search Result


Gene Information
Gene Name PSG4
Gene ID 5672
Gene Full Name pregnancy specific beta-1-glycoprotein 4
Gene Alias PSBG-4|PSBG-9|PSG9
Transcripts ENSG00000243137
Virus HPV
Gene Type protein-coding
HPA Location Info Secreted in female reproductive system;
Membrane Info Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID Q00888
HGNC ID HGNC:9521
OMIM ID 176393
Summary The protein encoded by this gene is a pregnancy-specific glycoprotein (PSG), one of several encoded by a cluster of similar genes on chromosome 19. This gene is a member of the carcinoembryonic antigen (CEA) gene family and may play a role in regulation of the innate immune system. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2015]
Target gene [PSG4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5002614 chr19 9 0 0 9 View
5015369 chr19 50 2 0 52 View
5017270 chr19 1 3 0 4 View
5017271 chr19 1 0 0 1 View

Target gene [PSG4] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - PSG4 peak across samples

Peak Plot

> Dataset: GSE143026 - PSG4 peak across samples

Peak Plot