HPV Target gene Detail Information

> PTCHD4 Gene Search Result


Gene Information
Gene Name PTCHD4
Gene ID 442213
Gene Full Name patched domain containing 4
Gene Alias C6orf138|PTCH53|SLC65C2|dJ402H5.2
Transcripts ENSG00000244694
Virus HPV
Gene Type protein-coding
HPA Location Info Plasma membrane, Cytosol;
Membrane Info Predicted membrane proteins
Uniport_ID Q6ZW05
HGNC ID HGNC:21345
OMIM ID 616908
Summary Predicted to be active in membrane. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [PTCHD4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5011709 chr6 8 2 1 11 View
5011710 chr6 0 0 7 7 View
5011799 chr6 0 0 0 0 View
5011800 chr6 1 0 0 1 View
5011801 chr6 0 0 1 1 View

Target gene [PTCHD4] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - PTCHD4 peak across samples

Peak Plot

> Dataset: GSE143026 - PTCHD4 peak across samples

Peak Plot