HPV Target gene Detail Information

> SOX2-OT Gene Search Result


Gene Information
Gene Name SOX2-OT
Gene ID 347689
Gene Full Name SOX2 overlapping transcript
Gene Alias NCRNA00043|SOX2OT
Transcripts ENSG00000242808
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:20209
OMIM ID 616338
lncRNASNP2 ID SOX2-OT
Summary This gene produces alternatively spliced long non-coding RNAs. These RNAs were observed to be upregulated in tumor cells and positively correlated to expression of the SRY-box 2 gene. Overexpression of these transcripts may promote cell proliferation. [provided by RefSeq, Dec 2017]
Target gene [SOX2-OT] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5002863 chr3 5 2 0 7 View
5004448 chr3 0 0 0 0 View
5004870 chr3 0 2 0 2 View
5005066 chr3 9 0 0 9 View
5005943 chr3 8 0 0 8 View
5008161 chr3 15 0 0 15 View
5013449 chr3 1 1 0 2 View
5013450 chr3 1 1 0 2 View
5013451 chr3 1 1 0 2 View
5013452 chr3 0 0 0 0 View
5013453 chr3 4 5 9 18 View
5013454 chr3 208 38 43 289 View
5013456 chr3 132 45 10 187 View
5013457 chr3 330 114 51 495 View
5013458 chr3 4 6 0 10 View
5013459 chr3 62 36 17 115 View
5013460 chr3 19 2 0 21 View
5013461 chr3 2 0 0 2 View
5013462 chr3 2 0 0 2 View
5017536 chr3 10 0 1 11 View
5017537 chr3 3 2 0 5 View
5017538 chr3 3 2 0 5 View
5017539 chr3 14 0 1 15 View
5017540 chr3 303 2 0 305 View
5017542 chr3 73 5 0 78 View

Target gene [SOX2-OT] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - SOX2-OT peak across samples

Peak Plot

> Dataset: GSE143026 - SOX2-OT peak across samples

Peak Plot