HBV Mutation Detail Information

Virus Mutation HBV Mutation L552H


Basic Characteristics of Mutations
Mutation Site L552H
Mutation Site Sentence FI score of HBV polymerase substitution. Substitutions with low FI were Y592F (0.895), Y592H (0.895), E598N (1.15), H599R (1.67), Q602H (0.805), Q602P (1.15), K603R (1.845), R609I (1.525), L611H (1.67), P616T (1.845), C622G (1.845), I625M (1.67), V626G (1.525), L628F (1.67), G630A (1.67), F631L (1.845), and A632C (1.445). L629G/W had medium functional impact with FI score of 1.975. Further neutral substitutions with FI score of 0 were G442L, S444P, L457F, N459H/Y, M464L, P465Q/H, D466K/N, Y470S/L, L481S, H491Q, F501L, R502Q, L515M, A521V, I522L, V526I, A529V, M539V, D541E, S548T/N, V549A/E, Q550H/S/P, L552H/R, S554A, F556Y, V559A, I568V, N573H/S, K574R, K576Q, Y580H, N583H, I589G, E598D, and I601R. Further neutral substitutions were C591S (− 1.1), I601K/M (0.69), I601V (− 0.625), Q602L (0.255), E606D/K (0.345), and I613V (− 1.355)
Mutation Level Amino acid level
Mutation Type Nonsynonymous substitution
Gene/Protein/Region RT
Standardized Encoding Gene P  
Genotype/Subtype D
Viral Reference -
Functional Impact and Mechanisms
Disease Hepatitis B, Chronic    
Immune -
Target Gene -
Clinical and Epidemiological Correlations
Clinical Information Y
Treatment -
Location Iran
Literature Information
PMID 31179360
Title Hepatitis B virus reverse transcriptase polymorphisms between treated and treatment-naive chronically infected patients
Author Rezanezhadi M,Mohebbi A,Askari FS,Hosseini SD,Tabarraei A
Journal Virusdisease
Journal Info 2019 Jun;30(2):219-226
Abstract The aim of this study was investigation of variation(s) in the Hepatitis B virus (HBV) reverse transcriptase domain. 120 patients with chronic HBV infection recruited. 104 patients were received nucleos(t)ide analogs treatments. DNA extractions were done from plasma samples. Direct sequencing and alignment of Polymerase Chain Reaction products were applied for further analysis. HBV genotypes determined by NCBI's Genotyping Tool. Polymorphism(s) were detected by using DnaSP software. Of 120 samples, 98 were sequenced. All of products were HBV genotype D. 13/98 (13.27%) of patients had M539I/V substitutions corresponding to YMDD motif. FLLAQ to FLMAQ was observed among 22/98 (22.98) patients. Two substitutions N459Y and L515M were significantly correlated (R(2) = 0.486 and R(2) = 0.941 respectively) with FLLAQ motif variation. Mutation ratio among treatment-received patients to treatment-naive patients was 0.2-0.6. Drug resistance conferring substitutions (DRCSs) were rtL180M (22/98), rtA194V (11/98), rtM204V (1/98), and rtM204I (11/98). Furthermore, six variants were observed among all patients. Appearance of DRCSs in HBV polymerase is a major obstacle to the virus treatments. In the present study, it was shown that DRCSs are more prevalent among treated patients. Therefore, replacement of current anti-viral regimen with novel anti-HBV drugs is warranted in the future.
Sequence Data MG652651-MG652748
Mutation Information
Note
Basic Characteristics of Mutations
  • Mutation Site: The specific location in a gene or protein sequence where a change occurs.
  • Mutation Level: The level at which a mutation occurs, including the nucleotide or amino acid level.
  • Mutation Type: The nature of the mutation, such as missense mutation, nonsense mutation, synonymous mutation, etc.
  • Gene/Protein/Region: Refers to the specific region of the virus where the mutation occurs. Including viral genes, viral proteins, or a specific viral genome region. If the article does not specifically indicate the relationship between the mutation and its correspondence, the main
  • Gene/Protein/Region studied in the article is marked.
  • Genotype/Subtype: Refers to the viral genotype or subtype where the mutation occurs. If the article does not specifically indicate the relationship between the mutation and its correspondence, the main Genotype/Subtype studied in the article is marked.
  • Viral Reference: Refers to the standard virus strain used to compare and analyze viral sequences.
Functional Impact and Mechanisms
  • Disease: An abnormal physiological state with specific symptoms and signs caused by viral infection.
  • Immune: The article focuses on the study of mutations and immune.
  • Target Gene: Host genes that viral mutations may affect.
Clinical and Epidemiological Correlations
  • Clinical Information: The study is a clinical or epidemiological study and provides basic information about the population.
  • Treatment: The study mentioned a certain treatment method, such as drug resistance caused by mutations. If the study does not specifically indicate the relationship between mutations and their correspondence treatment, the main treatment studied in the article is marked.
  • Location: The source of the research data.
Literature Information
  • Sequence Data: The study provides the data accession number.