EBV Target gene Detail Information

> ARHGAP19-SLIT1 Gene Search Result


Gene Information
Gene Name ARHGAP19-SLIT1
Gene ID 100533184
Gene Full Name ARHGAP19-SLIT1 readthrough (NMD candidate)
Gene Alias ARHGAP19
Transcripts ENSG00000269891
Virus EBV
Gene Type ncRNA
HGNC ID HGNC:48348
Summary This locus represents naturally occurring read-through transcription between the neighboring Rho GTPase activating protein 19 (ARHGAP19) and slit homolog 1 (SLIT1) genes on chromosome 10. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. [provided by RefSeq, Feb 2011]
Target gene [ARHGAP19-SLIT1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
3000056 chr10 411 18 13 442 View
3001220 chr10 116 84 5 205 View

Target gene [ARHGAP19-SLIT1] related to Omics data
Data ID Experiment type Sample number Platform
GSE42867 Expression array 12 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
C
  GSE246060 		Chip-seq 26 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE198334 		Chip-seq 4 Illumina NextSeq 500 (Homo sapiens)
GSE100458 Expression array 14 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray HGU133Plus2_Hs_ENTREZG_v21]
C
  GSE246059 		ATAC-seq 8 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE177046 RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE225248 		Chip-seq 12 Illumina NextSeq 500 (Homo sapiens)
GSE102203 Expression array 10 [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [probe set (exon) version]
GSE85599 Expression array 17 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE246060 - ARHGAP19-SLIT1 peak across samples

Peak Plot

> Dataset: GSE198334 - ARHGAP19-SLIT1 peak across samples

Peak Plot

> Dataset: GSE246059 - ARHGAP19-SLIT1 peak across samples

Peak Plot

> Dataset: GSE225248 - ARHGAP19-SLIT1 peak across samples

Peak Plot