Virus Dataset Detail

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Dataset Information
Accession GSE100458
Status 2018/1/25
Title Gene expression in EBV-positive versus EBV-loss clones derived from endemic Burkitt lymphoma cell lines
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Whilst the association of Epstein-Barr virus (EBV) with Burkitt lymphoma (BL) has long been recognized, the precise role of the virus in BL pathogenesis is not fully resolved. EBV can be lost spontaneously from some BL cell lines, and these EBV-loss lymphoma cells reportedly have a survival disadvantage. We have generated an extensive panel of EBV-loss clones from multiple BL backgrounds and examined their phenotype comparing them to their isogenic EBV-positive counterparts. Whilst loss of EBV from BL cells is rare, it is consistently associated with an enhanced predisposition to undergo apoptosis and reduced tumorigenicity in vivo. We investigated whether there were common gene expression changes between EBV-positive and loss clones derived for four endemic Burkitt lyphoma cell lines that could explain the apoptosis sensitivity of clones that had lost EBV.
Samples
GSM ID Sample info Characteristics Description
GSM2683397 Akata_a3_EBVloss cell line:Akata; cell line clone id:Akata_a3; ebv status:EBV loss Gene expression data from EBV loss cell line
GSM2683398 Akata_d1_EBVpos cell line:Akata; cell line clone id:Akata_d1; ebv status:EBV positive Gene expression data from EBV positive cell line
GSM2683399 Akata_d3_EBVloss cell line:Akata; cell line clone id:Akata_d3; ebv status:EBV loss Gene expression data from EBV loss cell line
GSM2683400 Akata_e1_EBVpos cell line:Akata; cell line clone id:Akata_e1; ebv status:EBV positive Gene expression data from EBV positive cell line
GSM2683401 Awia_20_EBVpos cell line:Awia; cell line clone id:Awia_20; ebv status:EBV positive Gene expression data from EBV positive cell line
GSM2683402 Awia_5e10_EBVloss cell line:Awia; cell line clone id:Awia_5e10; ebv status:EBV loss Gene expression data from EBV loss cell line
GSM2683403 Awia_9_EBVpos cell line:Awia; cell line clone id:Awia_9; ebv status:EBV positive Gene expression data from EBV positive cell line
GSM2683404 Awia_gl2_a11_EBVloss cell line:Awia; cell line clone id:Awia_gl2_a11; ebv status:EBV loss Gene expression data from EBV loss cell line
GSM2683405 Eli_1f2_EBVloss cell line:Elijah; cell line clone id:Eli_1f2; ebv status:EBV loss Gene expression data from EBV loss cell line
GSM2683406 Eli_c5_EBVpos cell line:Elijah; cell line clone id:Eli_c5; ebv status:EBV positive Gene expression data from EBV positive cell line
GSM2683407 Mutu_1_EBVloss cell line:Mutu; cell line clone id:Mutu_1; ebv status:EBV loss Gene expression data from EBV loss cell line
GSM2683408 Mutu_148_EBVpos cell line:Mutu; cell line clone id:Mutu_148; ebv status:EBV positive Gene expression data from EBV positive cell line
GSM2683409 Mutu_3_EBVloss cell line:Mutu; cell line clone id:Mutu_3; ebv status:EBV loss Gene expression data from EBV loss cell line
GSM2683410 Mutu_59_EBVpos cell line:Mutu; cell line clone id:Mutu_59; ebv status:EBV positive Gene expression data from EBV positive cell line
Platform GPL23270  : [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray HGU133Plus2_Hs_ENTREZG_v21]
Literature 28960205  
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xCell Plot
* p<0.05 ** p<0.01