HPV Target gene Detail Information

> CNTN4 Gene Search Result


Gene Information
Gene Name CNTN4
Gene ID 152330
Gene Full Name contactin 4
Gene Alias AXCAM|BIG-2
Transcripts ENSG00000144619
Virus HPV
Gene Type protein-coding
HPA Location Info Intracellular and membrane;
Membrane Info Disease related genes, Plasma proteins, Predicted intracellular proteins
Uniport_ID Q8IWV2
HGNC ID HGNC:2174
OMIM ID 607280
Summary This gene encodes a member of the contactin family of immunoglobulins. Contactins are axon-associated cell adhesion molecules that function in neuronal network formation and plasticity. The encoded protein is a glycosylphosphatidylinositol-anchored neuronal membrane protein that may play a role in the formation of axon connections in the developing nervous system. Deletion or mutation of this gene may play a role in 3p deletion syndrome and autism spectrum disorders. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2011]
Target gene [CNTN4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5002443 chr3 4 3 4 11 View
5005686 chr3 0 0 0 0 View
5008143 chr3 2 0 0 2 View
5009602 chr3 18 52 6 76 View
5011898 chr3 40 11 0 51 View
5017474 chr3 1130 386 388 1904 View
5017475 chr3 1130 392 394 1916 View
5017476 chr3 11 0 0 11 View
5017477 chr3 136 12 1 149 View
5017478 chr3 139 12 1 152 View

Target gene [CNTN4] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE197461 scRNA-seq 16 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - CNTN4 peak across samples

Peak Plot