HPV Target gene Detail Information

> FAT4 Gene Search Result


Gene Information
Gene Name FAT4
Gene ID 79633
Gene Full Name FAT atypical cadherin 4
Gene Alias CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2
Transcripts ENSG00000196159
Virus HPV
Gene Type protein-coding
HPA Location Info Cytosol;
Membrane Info Cancer-related genes, Disease related genes, Human disease related genes, Predicted membrane proteins
Uniport_ID Q6V0I7
HGNC ID HGNC:23109
OMIM ID 612411
Summary The protein encoded by this gene is a member of the protocadherin family. This gene may play a role in regulating planar cell polarity (PCP). Studies in mice suggest that loss of PCP signaling may cause cystic kidney disease, and mutations in this gene have been associated with Van Maldergem Syndrome 2. Alternatively spliced transcript variants have been noted for this gene. [provided by RefSeq, Mar 2014]
Target gene [FAT4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5000226 chr4 103 341 94 538 View
5005297 chr4 10 1 0 11 View
5005781 chr4 10 20 101 131 View
5006478 chr4 0 1 0 1 View
5010606 chr4 0 13 0 13 View

Target gene [FAT4] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE197461 scRNA-seq 16 Illumina NovaSeq 6000 (Homo sapiens)
E
  GSE140662 		Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
E
  TCGA_CESC 		DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE140662 - FAT4 expression across samples

Volcano Plot

Bar Plot

> Dataset: TCGA_CESC - FAT4 expression across samples

Volcano Plot

Bar Plot