HPV Target gene Detail Information

> GPD2 Gene Search Result


Gene Information
Gene Name GPD2
Gene ID 2820
Gene Full Name glycerol-3-phosphate dehydrogenase 2
Gene Alias GDH2|GPDM|mGDH|mGPDH
Transcripts ENSG00000115159
Virus HPV
Gene Type protein-coding
HPA Location Info Mitochondria;
Membrane Info Enzymes, Metabolic proteins, Plasma proteins, Predicted intracellular proteins
Uniport_ID P43304
HGNC ID HGNC:4456
OMIM ID 138430
Summary The protein encoded by this gene localizes to the inner mitochondrial membrane and catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate, using FAD as a cofactor. Along with GDP1, the encoded protein constitutes the glycerol phosphate shuttle, which reoxidizes NADH formed during glycolysis. Two transcript variants encoding the same protein have been found for this gene.[provided by RefSeq, Jan 2010]
Target gene [GPD2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5000038 chr2 2681 1675 1388 5744 View
5000065 chr2 2639 684 445 3768 View
5000505 chr2 127 13 18 158 View
5000506 chr2 127 13 18 158 View
5000599 chr2 110 4 9 123 View
5000633 chr2 50 50 14 114 View
5001340 chr2 22 8 8 38 View
5001444 chr2 28 5 1 34 View
5002102 chr2 9 7 0 16 View
5002581 chr2 5 4 1 10 View
5002665 chr2 4 5 0 9 View
5003582 chr2 1 2 0 3 View
5004218 chr2 1 0 0 1 View
5004219 chr2 1 0 0 1 View
5005031 chr2 5 1 0 6 View
5011365 chr2 1 0 0 1 View
5011468 chr2 873 536 179 1588 View
5011512 chr2 12 21 1 34 View
5013239 chr2 46 0 1 47 View
5013240 chr2 44 0 1 45 View
5013241 chr2 52 32 2 86 View
5013242 chr2 43 9 0 52 View
5013243 chr2 71 5 1 77 View
5015570 chr2 15 2 5 22 View
5017406 chr2 462 14 7 483 View

Target gene [GPD2] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE40774 Expression array 134 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE138080 Expression array 35 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
E
  TCGA_CESC 		DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: TCGA_CESC - GPD2 expression across samples

Volcano Plot

Bar Plot