HPV Target gene Detail Information

> NEBL Gene Search Result


Gene Information
Gene Name NEBL
Gene ID 10529
Gene Full Name nebulette
Gene Alias C10orf113|LASP2|LNEBL|bA165O3.1
Transcripts ENSG00000078114
Virus HPV
Gene Type protein-coding
HPA Location Info
Membrane Info Predicted intracellular proteins
Uniport_ID O76041
HGNC ID HGNC:16932
OMIM ID 605491
Summary This gene encodes a nebulin like protein that is abundantly expressed in cardiac muscle. The encoded protein binds actin and interacts with thin filaments and Z-line associated proteins in striated muscle. This protein may be involved in cardiac myofibril assembly. A shorter isoform of this protein termed LIM nebulette is expressed in non-muscle cells and may function as a component of focal adhesion complexes. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Mar 2010]
Target gene [NEBL] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5000529 chr10 17 87 44 148 View
5000758 chr10 14 64 10 88 View
5000896 chr10 13 52 5 70 View
5000938 chr10 34 2 30 66 View
5000939 chr10 27 4 35 66 View
5001026 chr10 17 4 36 57 View
5001124 chr10 13 33 4 50 View
5001535 chr10 11 13 5 29 View
5002434 chr10 6 5 0 11 View
5002435 chr10 10 1 0 11 View
5002465 chr10 6 5 0 11 View
5002528 chr10 9 0 1 10 View
5002953 chr10 1 0 5 6 View
5002954 chr10 1 0 5 6 View
5002955 chr10 1 0 5 6 View
5003261 chr10 3 1 0 4 View
5003435 chr10 0 2 1 3 View
5003436 chr10 0 2 1 3 View
5003996 chr10 0 1 0 1 View
5003997 chr10 1 0 0 1 View
5014698 chr10 2 1 9 12 View
5014699 chr10 2 2 0 4 View
5014700 chr10 12 6 0 18 View
5014701 chr10 16 1 0 17 View
5014702 chr10 47 102 15 164 View
5014703 chr10 4 1 0 5 View
5014704 chr10 17 6 1 24 View

Target gene [NEBL] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE40774 Expression array 134 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE164690 scRNA-seq 51 Illumina NextSeq 500 (Homo sapiens)
GSE138080 Expression array 35 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - NEBL peak across samples

Peak Plot

> Dataset: GSE143026 - NEBL peak across samples

Peak Plot