HPV Target gene Detail Information

> PRCD Gene Search Result


Gene Information
Gene Name PRCD
Gene ID 768206
Gene Full Name photoreceptor disc component
Gene Alias RP36
Transcripts ENSG00000214140
Virus HPV
Gene Type protein-coding
HPA Location Info Intracellular and membrane;
Membrane Info Disease related genes, Human disease related genes, Predicted intracellular proteins
Uniport_ID Q00LT1
HGNC ID HGNC:32528
OMIM ID 610598
Summary This gene is predominantly expressed in the retina, and mutations in this gene are the cause of autosomal recessive retinal degeneration in both humans and dogs. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Mar 2010]
Target gene [PRCD] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5013020 chr17 904 278 472 1654 View
5013021 chr17 649 54 27 730 View
5013023 chr17 855 88 4 947 View
5013024 chr17 1094 154 15 1263 View
5013025 chr17 1496 394 68 1958 View
5013027 chr17 19 1 0 20 View
5013028 chr17 29 4 3 36 View
5013029 chr17 58 4 1 63 View
5013030 chr17 59 4 1 64 View
5013031 chr17 96 48 82 226 View
5013032 chr17 43 0 0 43 View
5013033 chr17 43 0 0 43 View
5013034 chr17 42 0 0 42 View
5013035 chr17 281 23 10 314 View
5013036 chr17 282 23 10 315 View
5013037 chr17 575 909 576 2060 View
5013038 chr17 28 2 0 30 View

Target gene [PRCD] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048
Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE40774 Expression array 134 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026
ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - PRCD peak across samples

Peak Plot


> Dataset: GSE143026 - PRCD peak across samples

Peak Plot