HPV Target gene Detail Information

> TP73 Gene Search Result


Gene Information
Gene Name TP73
Gene ID 7161
Gene Full Name tumor protein p73
Gene Alias CILD47|P73
Transcripts ENSG00000078900
Virus HPV
Gene Type protein-coding
HPA Location Info Nucleoplasm, Plasma membrane;Golgi apparatus, Vesicles, Cell Junctions, Centrosome, Basal body;
Membrane Info Disease related genes, Human disease related genes, Plasma proteins, Predicted intracellular proteins, Transcription factors
Uniport_ID O15350
HGNC ID HGNC:12003
OMIM ID 601990
Summary This gene encodes a member of the p53 family of transcription factors involved in cellular responses to stress and development. It maps to a region on chromosome 1p36 that is frequently deleted in neuroblastoma and other tumors, and thought to contain multiple tumor suppressor genes. The demonstration that this gene is monoallelically expressed (likely from the maternal allele), supports the notion that it is a candidate gene for neuroblastoma. Many transcript variants resulting from alternative splicing and/or use of alternate promoters have been found for this gene, but the biological validity and the full-length nature of some variants have not been determined. [provided by RefSeq, Feb 2011]
Target gene [TP73] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5005387 chr1 25 11 0 36 View
5012266 chr1 1276 375 84 1735 View
5012268 chr1 63 3 0 66 View
5012269 chr1 77 87 7 171 View
5012270 chr1 260 236 68 564 View
5012271 chr1 380 2 0 382 View
5012272 chr1 380 2 0 382 View
5012273 chr1 29 5 0 34 View
5012274 chr1 22 4 1 27 View
5012275 chr1 23 4 1 28 View
5012277 chr1 7 2 0 9 View
5012278 chr1 17 4 0 21 View
5012279 chr1 658 263 74 995 View

Target gene [TP73] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048
Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE40774 Expression array 134 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026
ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
E
  TCGA_CESC
DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: TCGA_CESC - TP73 expression across samples

Volcano Plot


Bar Plot