HPV Target gene Detail Information

> BCL11B Gene Search Result


Gene Information
Gene Name BCL11B
Gene ID 64919
Gene Full Name BCL11 transcription factor B
Gene Alias ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha
Transcripts ENSG00000127152
Virus HPV
Gene Type protein-coding
HPA Location Info Nucleoplasm;Nucleoli fibrillar center;
Membrane Info Cancer-related genes, Disease related genes, Human disease related genes, Plasma proteins, Predicted intracellular proteins, Transcription factors
Uniport_ID Q9C0K0
HGNC ID HGNC:13222
OMIM ID 606558
Summary This gene encodes a C2H2-type zinc finger protein and is closely related to BCL11A, a gene whose translocation may be associated with B-cell malignancies. Although the specific function of this gene has not been determined, the encoded protein is known to be a transcriptional repressor, and is regulated by the NURD nucleosome remodeling and histone deacetylase complex. Four alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Aug 2013]
Target gene [BCL11B] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5000064 chr14 4272 3951 1560 9783 View
5000537 chr14 47 71 26 144 View
5002152 chr14 10 4 1 15 View
5006946 chr14 8 8 0 16 View
5006947 chr14 1 3 1 5 View
5006948 chr14 43 32 11 86 View
5006949 chr14 6 2 2 10 View
5006950 chr14 152 5 6 163 View
5006951 chr14 3 23 11 37 View
5006952 chr14 66 14 12 92 View
5008653 chr14 18 17 2 37 View
5008713 chr14 1 2 0 3 View
5008714 chr14 3 0 0 3 View
5008715 chr14 1 7 0 8 View
5008716 chr14 3 0 0 3 View
5008717 chr14 9 3 1 13 View
5008718 chr14 26 75 8 109 View
5008719 chr14 45 17 0 62 View
5008720 chr14 20 11 73 104 View
5008721 chr14 38 54 6 98 View
5008722 chr14 20 28 6 54 View
5008723 chr14 50 4 0 54 View
5008724 chr14 0 0 0 0 View
5008725 chr14 0 0 0 0 View
5008726 chr14 14 4 1 19 View
5008727 chr14 126 36 11 173 View
5008728 chr14 148 436 79 663 View
5008729 chr14 75 22 2 99 View
5015030 chr14 4 1 0 5 View
5015031 chr14 5 0 0 5 View
5015032 chr14 20 5 5 30 View
5015033 chr14 58 18 8 84 View
5015034 chr14 139 3 1 143 View
5015035 chr14 2 0 0 2 View
5015036 chr14 0 0 0 0 View
5017152 chr14 3 10 32 45 View
5017153 chr14 35 1 3 39 View

Target gene [BCL11B] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE226620 scRNA-seq 30 HiSeq X Ten (Homo sapiens)
GSE40774 Expression array 134 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
GSE139324 scRNA-seq 63 Illumina NextSeq 500 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE164690 scRNA-seq 51 Illumina NextSeq 500 (Homo sapiens)
GSE138080 Expression array 35 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
E
  TCGA_CESC 		DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE197461 scRNA-seq 16 Illumina NovaSeq 6000 (Homo sapiens)
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: TCGA_CESC - BCL11B expression across samples

Volcano Plot

Bar Plot