HPV Target gene Detail Information

> CDK13 Gene Search Result


Gene Information
Gene Name CDK13
Gene ID 8621
Gene Full Name cyclin dependent kinase 13
Gene Alias CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13
Transcripts ENSG00000065883
Virus HPV
Gene Type protein-coding
HPA Location Info Nuclear speckles;Golgi apparatus, Cytosol;
Membrane Info Disease related genes, Enzymes, Human disease related genes, Potential drug targets, Predicted intracellular proteins
Uniport_ID Q14004
HGNC ID HGNC:1733
OMIM ID 603309
Summary The protein encoded by this gene is a member of the cyclin-dependent serine/threonine protein kinase family. Members of this family are well known for their essential roles as master switches in cell cycle control. The exact function of this protein has not yet been determined, but it may play a role in mRNA processing and may be involved in regulation of hematopoiesis. Alternatively spliced transcript variants have been described.[provided by RefSeq, Dec 2009]
Target gene [CDK13] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5000406 chr7 204 4 16 224 View
5001791 chr7 22 0 0 22 View
5001954 chr7 18 0 0 18 View
5002069 chr7 15 1 0 16 View
5002176 chr7 14 0 0 14 View
5002518 chr7 10 0 0 10 View
5002619 chr7 8 1 0 9 View
5002620 chr7 9 0 0 9 View
5002816 chr7 5 2 0 7 View
5002817 chr7 7 0 0 7 View
5003097 chr7 5 0 0 5 View
5003422 chr7 3 0 0 3 View
5003423 chr7 2 1 0 3 View
5003661 chr7 1 1 0 2 View
5003662 chr7 2 0 0 2 View
5003663 chr7 2 0 0 2 View
5003664 chr7 2 0 0 2 View
5003665 chr7 2 0 0 2 View
5003855 chr7 1 1 0 2 View
5003856 chr7 1 1 0 2 View
5003957 chr7 1 0 0 1 View
5003958 chr7 1 0 0 1 View
5003959 chr7 1 0 0 1 View
5003960 chr7 1 0 0 1 View
5003961 chr7 1 0 0 1 View
5003962 chr7 1 0 0 1 View
5003963 chr7 1 0 0 1 View
5003964 chr7 1 0 0 1 View
5003965 chr7 1 0 0 1 View
5003966 chr7 1 0 0 1 View
5003967 chr7 1 0 0 1 View
5003968 chr7 1 0 0 1 View
5004208 chr7 0 1 0 1 View
5016219 chr7 3 3 0 6 View
5016220 chr7 3 0 0 3 View
5016221 chr7 2 0 0 2 View
5016222 chr7 42 0 0 42 View
5016223 chr7 368 10 18 396 View
5016224 chr7 44 0 1 45 View
5016225 chr7 39 4 1 44 View
5016226 chr7 1 0 0 1 View
5016227 chr7 2 0 0 2 View
5016228 chr7 7 0 0 7 View
5016229 chr7 14 3 0 17 View
5016230 chr7 24 1 0 25 View

Target gene [CDK13] related to Omics data
Data ID Experiment type Sample number Platform
GSE40774 Expression array 134 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE164690 scRNA-seq 51 Illumina NextSeq 500 (Homo sapiens)
GSE138080 Expression array 35 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE197461 scRNA-seq 16 Illumina NovaSeq 6000 (Homo sapiens)
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - CDK13 peak across samples

Peak Plot