HPV Target gene Detail Information

> CRAT Gene Search Result


Gene Information
Gene Name CRAT
Gene ID 1384
Gene Full Name carnitine O-acetyltransferase
Gene Alias CAT|CAT1|NBIA8
Transcripts ENSG00000095321
Virus HPV
Gene Type protein-coding
HPA Location Info Golgi apparatus, Cytosol;
Membrane Info Disease related genes, Enzymes, Human disease related genes, Metabolic proteins, Potential drug targets, Predicted intracellular proteins, Transporters
Uniport_ID P43155
HGNC ID HGNC:2342
OMIM ID 600184
Summary This gene encodes carnitine O-acetyltransferase, a member of the carnitine acyltransferase family and a key metabolic pathway enzyme which plays an important role in energy homeostasis and fat metabolism. This enzyme catalyzes the reversible transfer of acyl groups from an acyl-CoA thioester to carnitine and regulates the ratio of acyl-CoA/CoA. It is found in both the mitochondria and the peroxisome. Alternative splicing results in transcript variants encoding different isoforms that may localize to different subcellular compartments. [provided by RefSeq, Oct 2016]
Target gene [CRAT] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5000697 chr9 18 71 11 100 View
5000993 chr9 30 24 7 61 View
5001036 chr9 49 8 0 57 View
5001059 chr9 37 17 1 55 View
5001078 chr9 40 13 1 54 View
5003873 chr9 0 2 0 2 View
5009800 chr9 0 2 0 2 View
5009801 chr9 49 8 0 57 View
5009802 chr9 24 11 5 40 View
5009803 chr9 31 18 6 55 View
5009804 chr9 18 71 11 100 View
5017891 chr9 34 51 10 95 View
5017892 chr9 25 78 16 119 View
5017893 chr9 45 43 10 98 View
5017894 chr9 52 31 9 92 View
5017895 chr9 46 14 7 67 View
5017896 chr9 46 13 7 66 View
5017897 chr9 53 8 3 64 View
5017898 chr9 2 3 0 5 View
5017899 chr9 9 9 3 21 View
5017900 chr9 8 0 0 8 View
5017902 chr9 10 3 0 13 View
5017903 chr9 10 4 0 14 View
5017904 chr9 1642 309 38 1989 View
5017905 chr9 1635 307 38 1980 View

Target gene [CRAT] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE40774 Expression array 134 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE197461 scRNA-seq 16 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - CRAT peak across samples

Peak Plot

> Dataset: GSE143026 - CRAT peak across samples

Peak Plot