HPV Target gene Detail Information

> IL1RAP Gene Search Result


Gene Information
Gene Name IL1RAP
Gene ID 3556
Gene Full Name interleukin 1 receptor accessory protein
Gene Alias C3orf13|IL-1RAcP|IL1R3
Transcripts ENSG00000196083
Virus HPV
Gene Type protein-coding
HPA Location Info Vesicles, Cytosol;Secreted to blood;
Membrane Info Enzymes, Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins, Predicted secreted proteins
Uniport_ID Q9NPH3
HGNC ID HGNC:5995
OMIM ID 602626
Summary This gene encodes a component of the interleukin 1 receptor complex, which initiates signalling events that result in the activation of interleukin 1-responsive genes. Alternative splicing of this gene results in membrane-bound and soluble isoforms differing in their C-terminus. The ratio of soluble to membrane-bound forms increases during acute-phase induction or stress. [provided by RefSeq, Jul 2018]
Target gene [IL1RAP] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5000420 chr3 149 33 35 217 View
5000512 chr3 122 19 14 155 View
5000568 chr3 111 13 9 133 View
5000598 chr3 50 0 73 123 View
5000607 chr3 105 9 7 121 View
5000654 chr3 97 7 5 109 View
5000715 chr3 54 0 42 96 View
5000725 chr3 62 0 33 95 View
5000736 chr3 63 0 30 93 View
5000756 chr3 69 0 20 89 View
5000764 chr3 79 2 7 88 View
5000782 chr3 77 1 7 85 View
5006106 chr3 3 3 0 6 View
5006219 chr3 0 41 0 41 View
5011481 chr3 24 3 0 27 View
5015888 chr3 112 1 15 128 View
5015889 chr3 123 1 9 133 View

Target gene [IL1RAP] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048
Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE40774 Expression array 134 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
GSE139324 scRNA-seq 63 Illumina NextSeq 500 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE138080 Expression array 35 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026
ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
E
  TCGA_CESC
DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE197461 scRNA-seq 16 Illumina NovaSeq 6000 (Homo sapiens)
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: TCGA_CESC - IL1RAP expression across samples

Volcano Plot


Bar Plot