HPV Target gene Detail Information

> PSD4 Gene Search Result


Gene Information
Gene Name PSD4
Gene ID 23550
Gene Full Name pleckstrin and Sec7 domain containing 4
Gene Alias EFA6B|TIC
Transcripts ENSG00000125637
Virus HPV
Gene Type protein-coding
HPA Location Info
Membrane Info Predicted intracellular proteins
Uniport_ID Q8NDX1
HGNC ID HGNC:19096
OMIM ID 614442
Summary Predicted to enable guanyl-nucleotide exchange factor activity and phospholipid binding activity. Predicted to be involved in regulation of ARF protein signal transduction. Located in ruffle membrane. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [PSD4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5017326 chr2 3436 889 557 4882 View
5017327 chr2 3425 885 572 4882 View
5017328 chr2 470 184 273 927 View
5017329 chr2 392 83 33 508 View
5017330 chr2 40 7 1 48 View
5017331 chr2 435 240 118 793 View
5017332 chr2 626 1173 756 2555 View
5017333 chr2 9 9 3 21 View
5017334 chr2 18 9 1 28 View
5017335 chr2 92 100 21 213 View
5017336 chr2 100 39 9 148 View
5017337 chr2 27 12 2 41 View
5017338 chr2 22 8 2 32 View
5017339 chr2 8 5 3 16 View
5017340 chr2 50 12 0 62 View
5017341 chr2 50 12 0 62 View
5017342 chr2 56 15 0 71 View
5017343 chr2 48 11 0 59 View
5017344 chr2 9 3 6 18 View
5017345 chr2 11 2 2 15 View
5017346 chr2 13 0 0 13 View
5017347 chr2 52 3 0 55 View
5017348 chr2 80 64 1 145 View

Target gene [PSD4] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE40774 Expression array 134 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE138080 Expression array 35 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE197461 scRNA-seq 16 Illumina NovaSeq 6000 (Homo sapiens)
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - PSD4 peak across samples

Peak Plot

> Dataset: GSE143026 - PSD4 peak across samples

Peak Plot