HPV Target gene Detail Information

> RPS29 Gene Search Result


Gene Information
Gene Name RPS29
Gene ID 6235
Gene Full Name ribosomal protein S29
Gene Alias DBA13|S29|uS14
Transcripts ENSG00000213741
Virus HPV
Gene Type protein-coding
HPA Location Info Endoplasmic reticulum, Cytosol;
Membrane Info Disease related genes, Human disease related genes, Predicted intracellular proteins, Ribosomal proteins
Uniport_ID P62273
HGNC ID HGNC:10419
OMIM ID 603633
Summary Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit and a member of the S14P family of ribosomal proteins. The protein, which contains a C2-C2 zinc finger-like domain that can bind to zinc, can enhance the tumor suppressor activity of Ras-related protein 1A (KREV1). It is located in the cytoplasm. Variable expression of this gene in colorectal cancers compared to adjacent normal tissues has been observed, although no correlation between the level of expression and the severity of the disease has been found. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2013]
Target gene [RPS29] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5013977 chr14 524 2191 2007 4722 View
5013978 chr14 522 1971 1980 4473 View
5013979 chr14 520 1955 1977 4452 View
5013980 chr14 519 1943 1976 4438 View
5013981 chr14 506 1678 1627 3811 View
5013982 chr14 503 1615 1366 3484 View
5013983 chr14 499 1577 1287 3363 View
5013984 chr14 490 1454 1138 3082 View
5013985 chr14 490 1446 1125 3061 View
5013986 chr14 489 1435 1110 3034 View
5013987 chr14 474 1259 943 2676 View
5013988 chr14 473 1203 919 2595 View
5013989 chr14 454 974 763 2191 View
5013990 chr14 445 893 730 2068 View
5013991 chr14 433 773 705 1911 View
5013992 chr14 436 693 688 1817 View
5013993 chr14 446 694 675 1815 View
5013994 chr14 446 695 667 1808 View
5013995 chr14 451 699 663 1813 View
5013996 chr14 446 700 659 1805 View
5013997 chr14 448 702 650 1800 View
5013998 chr14 449 704 644 1797 View
5013999 chr14 449 707 645 1801 View
5014000 chr14 449 706 646 1801 View
5014001 chr14 448 707 644 1799 View
5014002 chr14 451 713 642 1806 View
5014003 chr14 459 717 639 1815 View
5014004 chr14 494 735 635 1864 View
5014005 chr14 520 740 634 1894 View
5014006 chr14 523 741 636 1900 View
5014007 chr14 569 771 654 1994 View
5014008 chr14 650 842 776 2268 View
5014009 chr14 701 927 947 2575 View
5014010 chr14 706 933 960 2599 View
5014011 chr14 712 937 974 2623 View
5014012 chr14 720 961 1020 2701 View
5014013 chr14 724 1031 1147 2902 View
5014014 chr14 724 1030 1156 2910 View
5014015 chr14 726 1030 1186 2942 View
5014016 chr14 726 1075 1209 3010 View
5014017 chr14 724 1090 1209 3023 View
5014018 chr14 722 1101 1210 3033 View

Target gene [RPS29] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
S
  GSE226620 		scRNA-seq 30 HiSeq X Ten (Homo sapiens)
GSE40774 Expression array 134 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
S
  GSE139324 		scRNA-seq 63 Illumina NextSeq 500 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
S
  GSE164690 		scRNA-seq 51 Illumina NextSeq 500 (Homo sapiens)
GSE138080 Expression array 35 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
S
  GSE197461 		scRNA-seq 16 Illumina NovaSeq 6000 (Homo sapiens)
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a feature/violin plot will be displayed.


> Dataset: GSE226620 - Gene expression in cell subsets

> Dataset: GSE139324 - Gene expression in cell subsets

> Dataset: GSE164690 - Gene expression in cell subsets

> Dataset: GSE197461 - Gene expression in cell subsets