HPV Target gene Detail Information

> RREB1 Gene Search Result


Gene Information
Gene Name RREB1
Gene ID 6239
Gene Full Name ras responsive element binding protein 1
Gene Alias FINB|HNT|LZ321|RREB-1|Zep-1
Transcripts ENSG00000124782
Virus HPV
Gene Type protein-coding
HPA Location Info Nuclear speckles;Nucleoli fibrillar center;
Membrane Info Predicted intracellular proteins, Transcription factors
Uniport_ID Q92766
HGNC ID HGNC:10449
OMIM ID 602209
Summary The protein encoded by this gene is a zinc finger transcription factor that binds to RAS-responsive elements (RREs) of gene promoters. It has been shown that the calcitonin gene promoter contains an RRE and that the encoded protein binds there and increases expression of calcitonin, which may be involved in Ras/Raf-mediated cell differentiation. Multiple transcript variants encoding several different isoforms have been found for this gene. [provided by RefSeq, Dec 2009]
Target gene [RREB1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5004753 chr6 151 76 147 374 View
5010977 chr6 1 0 0 1 View
5011010 chr6 148 5 0 153 View
5011251 chr6 72 155 3 230 View
5013626 chr6 56 3 0 59 View
5016098 chr6 3029 705 399 4133 View
5016099 chr6 1753 330 140 2223 View
5017711 chr6 24 0 0 24 View
5017712 chr6 23 0 0 23 View
5017713 chr6 40 32 36 108 View
5017714 chr6 3 2 0 5 View

Target gene [RREB1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048
Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE40774 Expression array 134 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
GSE139324 scRNA-seq 63 Illumina NextSeq 500 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE164690 scRNA-seq 51 Illumina NextSeq 500 (Homo sapiens)
GSE138080 Expression array 35 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026
ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE197461 scRNA-seq 16 Illumina NovaSeq 6000 (Homo sapiens)
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - RREB1 peak across samples

Peak Plot


> Dataset: GSE143026 - RREB1 peak across samples

Peak Plot