HPV Target gene Detail Information

> VMP1 Gene Search Result


Gene Information
Gene Name VMP1
Gene ID 81671
Gene Full Name vacuole membrane protein 1
Gene Alias EPG3|TANGO5|TMEM49
Transcripts ENSG00000062716
Virus HPV
Gene Type protein-coding
HPA Location Info Endoplasmic reticulum;Nucleoli;
Membrane Info Predicted intracellular proteins, Predicted membrane proteins, Transporters
Uniport_ID Q96GC9
HGNC ID HGNC:29559
OMIM ID 611753
Summary This gene encodes a transmembrane protein that plays a key regulatory role in the process of autophagy. The ectopic overexpression of the encoded protein in cultured cells triggers autophagy even under nutrient-rich conditions. This gene is overexpressed in pancreatitis affected acinar cells where the encoded protein mediates sequestration and degradation of potentially deleterious activated zymogen granules in a process termed, zymophagy. [provided by RefSeq, Jul 2016]
Target gene [VMP1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5000283 chr17 362 2 1 365 View
5000288 chr17 344 12 1 357 View
5000300 chr17 330 9 0 339 View
5000305 chr17 335 1 0 336 View
5003597 chr17 2 0 1 3 View
5007265 chr17 24 2 5 31 View
5007266 chr17 4 3 0 7 View
5007267 chr17 3 7 0 10 View
5007268 chr17 7 0 0 7 View
5008539 chr17 13 4 0 17 View
5012977 chr17 2071 3162 1872 7105 View
5012978 chr17 2 3 0 5 View
5012979 chr17 23 3 3 29 View
5012980 chr17 16 6 2 24 View
5012981 chr17 11 14 0 25 View
5012982 chr17 20 4 0 24 View
5012983 chr17 21 4 0 25 View
5012984 chr17 11 13 0 24 View
5012985 chr17 61 12 1 74 View
5012986 chr17 32 10 1 43 View
5012987 chr17 33 9 4 46 View
5012988 chr17 140 25 2 167 View
5012989 chr17 28 32 9 69 View
5012990 chr17 648 143 16 807 View
5012991 chr17 32 1 0 33 View
5012992 chr17 50 2 3 55 View
5012993 chr17 3917 754 117 4788 View
5012994 chr17 3992 726 132 4850 View
5012995 chr17 1894 131 4 2029 View
5015248 chr17 18 2 2 22 View
5015249 chr17 13 1 0 14 View
5015250 chr17 102 7 0 109 View
5015251 chr17 129 20 0 149 View
5015252 chr17 1924 109 2 2035 View

Target gene [VMP1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE226620 scRNA-seq 30 HiSeq X Ten (Homo sapiens)
GSE40774 Expression array 134 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
S
  GSE139324 		scRNA-seq 63 Illumina NextSeq 500 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
S
  GSE164690 		scRNA-seq 51 Illumina NextSeq 500 (Homo sapiens)
E
  GSE138080 		Expression array 35 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE197461 scRNA-seq 16 Illumina NovaSeq 6000 (Homo sapiens)
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE138080 - VMP1 expression across samples

Volcano Plot

Bar Plot