HPV Target gene Detail Information

> SAMSN1 Gene Search Result


Gene Information
Gene Name SAMSN1
Gene ID 64092
Gene Full Name SAM domain, SH3 domain and nuclear localization signals 1
Gene Alias HACS1|NASH1|SASH2|SH3D6B|SLy2
Transcripts ENSG00000155307
Virus HPV
Gene Type protein-coding
HPA Location Info Plasma membrane;Nucleoplasm;
Membrane Info Predicted intracellular proteins
Uniport_ID Q9NSI8
HGNC ID HGNC:10528
OMIM ID 607978
Summary SAMSN1 is a member of a novel gene family of putative adaptors and scaffold proteins containing SH3 and SAM (sterile alpha motif) domains (Claudio et al., 2001 [PubMed 11536050]).[supplied by OMIM, Mar 2008]
Target gene [SAMSN1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5010541 chr21 7 0 0 7 View

Target gene [SAMSN1] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
S
  GSE197461
scRNA-seq 16 Illumina NovaSeq 6000 (Homo sapiens)
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE199029 Variation;RNA-seq 44 NanoString Human nCounter PanCancer IO360 Panel
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)
C
  GSE183048
Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
S
  GSE226620
scRNA-seq 30 HiSeq X Ten (Homo sapiens)
GSE40774 Expression array 134 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
S
  GSE139324
scRNA-seq 63 Illumina NextSeq 500 (Homo sapiens)
GSE138080 Expression array 35 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE143026
ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
S
  GSE164690
scRNA-seq 51 Illumina NextSeq 500 (Homo sapiens)
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA


When the query gene is differentially changed in the dataset, a feature/violin plot will be displayed.


> Dataset: GSE197461 - Gene expression in cell subsets

> Dataset: GSE226620 - Gene expression in cell subsets

> Dataset: GSE139324 - Gene expression in cell subsets

> Dataset: GSE164690 - Gene expression in cell subsets