HIV Target gene Detail Information

> PDXDC2P-NPIPB14P Gene Search Result


Gene Information
Gene Name PDXDC2P-NPIPB14P
Gene ID 283970
Gene Full Name PDXDC2P-NPIPB14P readthrough, transcribed pseudogene
Gene Alias -
Transcripts ENSG00000196696
Virus HIV
Gene Type pseudo
HGNC ID HGNC:53158
Summary This locus represents naturally-occurring readthrough transcription between two pseudogenes, PDXDC2P (pyridoxal dependent decarboxylase domain containing 2, pseudogene) and NPIPB14P (nuclear pore complex interacting protein family, member B14, pseudogene). The individual pseudogene loci are not curated as transcribed regions. Readthrough transcripts likely do not encode functional proteins. [provided by RefSeq, Feb 2017]
Target gene [PDXDC2P-NPIPB14P] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4014706 chr16 2 0 0 2 View
4015625 chr16 0 0 1 1 View
4015626 chr16 0 0 1 1 View

Target gene [PDXDC2P-NPIPB14P] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE220859 - PDXDC2P-NPIPB14P peak across samples

Peak Plot

> Dataset: GSE211651 - PDXDC2P-NPIPB14P peak across samples

Peak Plot

> Dataset: GSE221688 - PDXDC2P-NPIPB14P peak across samples

Peak Plot

> Dataset: GSE100376 - PDXDC2P-NPIPB14P peak across samples

Peak Plot

> Dataset: GSE165705 - PDXDC2P-NPIPB14P peak across samples

Peak Plot

> Dataset: GSE144329 - PDXDC2P-NPIPB14P peak across samples

Peak Plot

> Dataset: GSE165703 - PDXDC2P-NPIPB14P peak across samples

Peak Plot

> Dataset: GSE100266 - PDXDC2P-NPIPB14P peak across samples

Peak Plot