HIV Target gene Detail Information

> PALS1 Gene Search Result


Gene Information
Gene Name PALS1
Gene ID 64398
Gene Full Name protein associated with LIN7 1, MAGUK p55 family member
Gene Alias MPP5
Transcripts ENSG00000072415
Virus HIV
Gene Type protein-coding
HPA Location Info Nucleoplasm, Plasma membrane;Cell Junctions, Cytosol;
Membrane Info Plasma proteins, Predicted intracellular proteins
Uniport_ID Q8N3R9
HGNC ID HGNC:18669
OMIM ID 606958
Summary This gene encodes a member of the p55-like subfamily of the membrane-associated guanylate kinase (MAGUK) gene superfamily. The encoded protein participates in the polarization of differentiating cells, has been shown to regulate myelinating Schwann cells (PMID: 20237282), and is one of the components of the Crumbs complex in the retina. Mice which express lower levels of the orthologous protein have retinal degeneration and impaired vision (PMID: 22114289). Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Feb 2012]
Target gene [PALS1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4001119 chr14 158 9 44 211 View
4004675 chr14 2 39 0 41 View
4005909 chr14 15 8 5 28 View
4006948 chr14 1 21 0 22 View

Target gene [PALS1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE30738 		Chip-seq 2 Illumina Genome Analyzer II (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
GSE68028 MeDIP-chip 1 NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE30738 - PALS1 peak across samples

Peak Plot

> Dataset: GSE220859 - PALS1 peak across samples

Peak Plot

> Dataset: GSE211651 - PALS1 peak across samples

Peak Plot

> Dataset: GSE221688 - PALS1 peak across samples

Peak Plot

> Dataset: GSE100376 - PALS1 peak across samples

Peak Plot

> Dataset: GSE165705 - PALS1 peak across samples

Peak Plot

> Dataset: GSE144329 - PALS1 peak across samples

Peak Plot

> Dataset: GSE165703 - PALS1 peak across samples

Peak Plot

> Dataset: GSE100266 - PALS1 peak across samples

Peak Plot