Gene Name	NBPF20
Gene ID	100288142
Gene Full Name	NBPF member 20
Gene Alias	-
Transcripts	ENSG00000162825
Virus	HIV
Gene Type	protein-coding
HPA Location Info	Primary cilium, Cytosol;Golgi apparatus, Vesicles, Cytokinetic bridge, Mid piece, Principal piece, End piece;
Membrane Info	Predicted intracellular proteins
HGNC ID	HGNC:32000
OMIM ID	614007
Summary	This gene is a member of the neuroblastoma breakpoint family (NBPF) which consists of dozens of recently duplicated genes primarily located in segmental duplications on human chromosome 1. This gene family has experienced its greatest expansion within the human lineage and has expanded, to a lesser extent, among primates in general. Members of this gene family are characterized by tandemly repeated copies of DUF1220 protein domains. Gene copy number variations in the human chromosomal region 1q21.1, where most DUF1220 domains are located, have been implicated in a number of developmental and neurogenetic diseases such as microcephaly, macrocephaly, autism, schizophrenia, cognitive disability, congenital heart disease, neuroblastoma, and congenital kidney and urinary tract anomalies. Altered expression of some gene family members is associated with several types of cancer. This gene family contains numerous pseudogenes. [provided by RefSeq, Mar 2014]

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4008107	chr1	13	3	0	16	View
4008108	chr1	15	1	0	16	View
4011124	chr1	7	0	0	7	View
4013134	chr1	4	0	0	4	View
4013135	chr1	4	0	0	4	View
4014303	chr1	2	0	0	2	View
4015014	chr1	1	0	0	1	View
4016119	chr1	0	0	0	0	View
4016120	chr1	0	0	0	0	View
4016122	chr1	0	0	0	0	View
4016548	chr1	0	0	0	0	View
4016549	chr1	0	0	0	0	View
4016708	chr1	0	0	0	0	View

Data ID	Experiment type	Sample number	Platform
C   GSE221688	Chip-seq;scATAC-Seq;scRNA-Seq	12	Illumina NovaSeq 6000 (Homo sapiens)
GSE144332	RNA-seq	75	NextSeq 550 (Homo sapiens)
C   GSE165705	Chip-seq	30	Illumina NovaSeq 6000 (Homo sapiens)
GSE164264	RNA-seq	6	BGISEQ-500 (Homo sapiens)
GSE128121	RNA-seq	16	Illumina HiSeq 4000 (Homo sapiens)
GSE162914	RNA-seq	211	Illumina HiSeq 2500 (Homo sapiens)
GSE279982	Methylation profiling (Array)	576	Infinium MethylationEPIC
C   GSE144329	ATAC-seq	96	NextSeq 550 (Homo sapiens)
GSE205204	RNA-seq	14	Illumina NovaSeq 6000 (Homo sapiens)
GSE125686	RNA-seq	62	Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
GSE198339	scRNA-seq	8	Illumina NovaSeq 6000 (Homo sapiens)
C   GSE220859	Chip-seq	11	Illumina NovaSeq 6000 (Homo sapiens)
GSE165708	RNA-seq	100	Illumina HiSeq 4000 (Homo sapiens)
C   GSE211651	Chip-seq;RNA-seq;PRO-seq	39	Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE68028	MeDIP-chip	1	NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
C   GSE100376	ATAC-seq	24	Illumina NextSeq 500 (Homo sapiens)
GSE167211	RNA-seq	1	Illumina HiSeq 2000 (Homo sapiens)
GSE165132	RNA-seq	56	NextSeq 550 (Homo sapiens)
C   GSE100266	ATAC-seq;Chip-seq;RNA-seq	32	Illumina HiSeq 2500 (Homo sapiens)
C   GSE165703	ATAC-seq	82	Illumina HiSeq 4000 (Homo sapiens)
GSE246082	RNA-seq	6	Illumina HiSeq 4000 (Homo sapiens)

• Genome binding/occupancy profiling

When the gene can detect a peak in the dataset, a peak plot will be displayed.

> Dataset: GSE221688 - NBPF20 peak across samples

Peak Plot

> Dataset: GSE165705 - NBPF20 peak across samples

Peak Plot

> Dataset: GSE144329 - NBPF20 peak across samples

Peak Plot

> Dataset: GSE220859 - NBPF20 peak across samples

Peak Plot

> Dataset: GSE211651 - NBPF20 peak across samples

Peak Plot

> Dataset: GSE100376 - NBPF20 peak across samples

Peak Plot

> Dataset: GSE100266 - NBPF20 peak across samples

Peak Plot

> Dataset: GSE165703 - NBPF20 peak across samples

Peak Plot