HIV Target gene Detail Information

> APOBEC3F Gene Search Result


Gene Information
Gene Name APOBEC3F
Gene ID 200316
Gene Full Name apolipoprotein B mRNA editing enzyme catalytic subunit 3F
Gene Alias A3F|ARP8|BK150C2.4.MRNA|KA6
Transcripts ENSG00000128394
Virus HIV
Gene Type protein-coding
HPA Location Info Nucleoplasm, Cytosol;
Membrane Info Enzymes, Predicted intracellular proteins
Uniport_ID Q8IUX4
HGNC ID HGNC:17356
OMIM ID 608993
Summary This gene is a member of the cytidine deaminase gene family. It is one of seven related genes or pseudogenes found in a cluster, thought to result from gene duplication, on chromosome 22. Members of the cluster encode proteins that are structurally and functionally related to the C to U RNA-editing cytidine deaminase APOBEC1. It is thought that the proteins may be RNA editing enzymes and have roles in growth or cell cycle control. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]
Target gene [APOBEC3F] related to virus gene/protein/region

Mutation Table: if previous studies reported that target gene was related to virus gene/region/protein, the information in this literature was listed in this section


ID PMID Mutation Gene/Protein/Region Encoding Gene/Protein Disease Description Detail
1 26537685 E171A
Vif
Vif
HIV Infections
G
R
I
T
 View
2 26537685 E76A
Vif
Vif
HIV Infections
G
R
I
T
 View
3 26537685 R173A
Vif
Vif
HIV Infections
G
R
I
T
 View
4 26537685 R17A
Vif
Vif
HIV Infections
G
R
I
T
 View

Target gene [APOBEC3F] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE99737 RNA-seq 9 Illumina HiSeq 2500 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
GSE262621 RNA-seq 70 Illumina NovaSeq 6000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
GSE187515 scRNA-seq 104 Illumina MiSeq (Homo sapiens);Illumina HiSeq 4000 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE279982 Methylation profiling (Array) 576 Infinium MethylationEPIC
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
GSE198339 scRNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE221688 - APOBEC3F peak across samples

Peak Plot

> Dataset: GSE165705 - APOBEC3F peak across samples

Peak Plot

> Dataset: GSE144329 - APOBEC3F peak across samples

Peak Plot

> Dataset: GSE220859 - APOBEC3F peak across samples

Peak Plot

> Dataset: GSE211651 - APOBEC3F peak across samples

Peak Plot

> Dataset: GSE100376 - APOBEC3F peak across samples

Peak Plot

> Dataset: GSE100266 - APOBEC3F peak across samples

Peak Plot

> Dataset: GSE165703 - APOBEC3F peak across samples

Peak Plot