Virus Dataset Detail

> Detail information for each sample

Dataset Information
Accession GSE262621
Status 2024/6/1
Title Gene expression profiling of HIV-associated diffuse large B-cell lymphomas from Malawi
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To investigate the biological differences between HIV-, HIV+/ART-experienced and HIV+/ART-naive diffuse large B-cell lymphoma, we performed RNA sequencing of 70 pre-treatment formalin-fixed paraffin-embedded (FFPE) whole lymph node biopsies of diffuse large B-cell lymphoma.
Samples
GSM ID Sample info Characteristics Description
GSM8172585 SMR59, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR59
GSM8172586 SMR6, DLBCL, Naive, Male tissue:FFPE tumor; genotype:Male; treatment:Naive; disease state:DLBCL SMR6
GSM8172587 SMR60, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR60
GSM8172588 SMR61, DLBCL, Exp, Female tissue:FFPE tumor; genotype:Female; treatment:Exp; disease state:DLBCL SMR61
GSM8172589 SMR63, EBV+ DLBCL, HIVneg, Female tissue:FFPE tumor; genotype:Female; treatment:HIVneg; disease state:EBV+ DLBCL SMR63
GSM8172590 SMR65, DLBCL, Exp, Female tissue:FFPE tumor; genotype:Female; treatment:Exp; disease state:DLBCL SMR65
GSM8172591 SMR66, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR66
GSM8172592 SMR67, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR67
GSM8172593 SMR69, DLBCL, HIVneg, Female tissue:FFPE tumor; genotype:Female; treatment:HIVneg; disease state:DLBCL SMR69
GSM8172594 SMR71, EBV+ DLBCL, Exp, Female tissue:FFPE tumor; genotype:Female; treatment:Exp; disease state:EBV+ DLBCL SMR71
GSM8172595 SMR76, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR76
GSM8172596 SMR77, DLBCL, HIVneg, Male tissue:FFPE tumor; genotype:Male; treatment:HIVneg; disease state:DLBCL SMR77
GSM8172597 SMR78, DLBCL, Naive, Female tissue:FFPE tumor; genotype:Female; treatment:Naive; disease state:DLBCL SMR78
GSM8172598 SMR79, DLBCL, Naive, Female tissue:FFPE tumor; genotype:Female; treatment:Naive; disease state:DLBCL SMR79
GSM8172599 SMR8, EBV+ DLBCL, Naive, Female tissue:FFPE tumor; genotype:Female; treatment:Naive; disease state:EBV+ DLBCL SMR8
GSM8172600 SMR81, DLBCL, Naive, Female tissue:FFPE tumor; genotype:Female; treatment:Naive; disease state:DLBCL SMR81
GSM8172601 SMR82, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR82
GSM8172602 SMR84, DLBCL, HIVneg, Male tissue:FFPE tumor; genotype:Male; treatment:HIVneg; disease state:DLBCL SMR84
GSM8172603 SMR85, FL/DLBCL, HIVneg, Male tissue:FFPE tumor; genotype:Male; treatment:HIVneg; disease state:FL/DLBCL SMR85
GSM8172604 SMR86, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR86
GSM8172605 SMR87, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR87
GSM8172606 SMR88, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR88
GSM8172607 SMR89, DLBCL, Exp, Female tissue:FFPE tumor; genotype:Female; treatment:Exp; disease state:DLBCL SMR89
GSM8172542 SMR1, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR1
GSM8172608 SMR9, DLBCL, Exp, Female tissue:FFPE tumor; genotype:Female; treatment:Exp; disease state:DLBCL SMR9
GSM8172543 SMR10, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR10
GSM8172609 SMR90, DLBCL, Naive, Female tissue:FFPE tumor; genotype:Female; treatment:Naive; disease state:DLBCL SMR90
GSM8172544 SMR11, DLBCL, HIVneg, Male tissue:FFPE tumor; genotype:Male; treatment:HIVneg; disease state:DLBCL SMR11
GSM8172610 SMR91, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR91
GSM8172545 SMR13, DLBCL, HIVneg, Male tissue:FFPE tumor; genotype:Male; treatment:HIVneg; disease state:DLBCL SMR13
GSM8172611 SMR92, DLBCL, HIVneg, Male tissue:FFPE tumor; genotype:Male; treatment:HIVneg; disease state:DLBCL SMR92
GSM8172546 SMR14, EBV+ DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:EBV+ DLBCL SMR14
GSM8172547 SMR15, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR15
GSM8172548 SMR16, DLBCL, HIVneg, Male tissue:FFPE tumor; genotype:Male; treatment:HIVneg; disease state:DLBCL SMR16
GSM8172549 SMR18, DLBCL, HIVneg, Male tissue:FFPE tumor; genotype:Male; treatment:HIVneg; disease state:DLBCL SMR18
GSM8172550 SMR19, DLBCL, Naive, Female tissue:FFPE tumor; genotype:Female; treatment:Naive; disease state:DLBCL SMR19
GSM8172551 SMR2, DLBCL, Exp, Female tissue:FFPE tumor; genotype:Female; treatment:Exp; disease state:DLBCL SMR2
GSM8172552 SMR20, EBV+ DLBCL, HIVneg, Male tissue:FFPE tumor; genotype:Male; treatment:HIVneg; disease state:EBV+ DLBCL SMR20
GSM8172553 SMR22, DLBCL, Naive, Female tissue:FFPE tumor; genotype:Female; treatment:Naive; disease state:DLBCL SMR22
GSM8172554 SMR23, DLBCL, Naive, Male tissue:FFPE tumor; genotype:Male; treatment:Naive; disease state:DLBCL SMR23
GSM8172555 SMR24, DLBCL, HIVneg, Male tissue:FFPE tumor; genotype:Male; treatment:HIVneg; disease state:DLBCL SMR24
GSM8172556 SMR25, DLBCL, HIVneg, Male tissue:FFPE tumor; genotype:Male; treatment:HIVneg; disease state:DLBCL SMR25
GSM8172557 SMR26, DLBCL, HIVneg, Male tissue:FFPE tumor; genotype:Male; treatment:HIVneg; disease state:DLBCL SMR26
GSM8172558 SMR27, DLBCL, Exp, Female tissue:FFPE tumor; genotype:Female; treatment:Exp; disease state:DLBCL SMR27
GSM8172559 SMR28, FL/DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:FL/DLBCL SMR28
GSM8172560 SMR29, DLBCL, Naive, Male tissue:FFPE tumor; genotype:Male; treatment:Naive; disease state:DLBCL SMR29
GSM8172561 SMR3, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR3
GSM8172562 SMR30, DLBCL, Naive, Female tissue:FFPE tumor; genotype:Female; treatment:Naive; disease state:DLBCL SMR30
GSM8172563 SMR31, DLBCL, Naive, Male tissue:FFPE tumor; genotype:Male; treatment:Naive; disease state:DLBCL SMR31
GSM8172564 SMR32, DLBCL, HIVneg, Female tissue:FFPE tumor; genotype:Female; treatment:HIVneg; disease state:DLBCL SMR32
GSM8172565 SMR33, DLBCL, Naive, Female tissue:FFPE tumor; genotype:Female; treatment:Naive; disease state:DLBCL SMR33
GSM8172566 SMR34, DLBCL, HIVneg, Female tissue:FFPE tumor; genotype:Female; treatment:HIVneg; disease state:DLBCL SMR34
GSM8172567 SMR35, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR35
GSM8172568 SMR36, DLBCL, Naive, Female tissue:FFPE tumor; genotype:Female; treatment:Naive; disease state:DLBCL SMR36
GSM8172569 SMR37, DLBCL, Exp, Female tissue:FFPE tumor; genotype:Female; treatment:Exp; disease state:DLBCL SMR37
GSM8172570 SMR38, DLBCL, HIVneg, Female tissue:FFPE tumor; genotype:Female; treatment:HIVneg; disease state:DLBCL SMR38
GSM8172571 SMR39, DLBCL, HIVneg, Female tissue:FFPE tumor; genotype:Female; treatment:HIVneg; disease state:DLBCL SMR39
GSM8172572 SMR4, FL/DLBCL, HIVneg, Female tissue:FFPE tumor; genotype:Female; treatment:HIVneg; disease state:FL/DLBCL SMR4
GSM8172573 SMR40, DLBCL, HIVneg, Male tissue:FFPE tumor; genotype:Male; treatment:HIVneg; disease state:DLBCL SMR40
GSM8172574 SMR41, DLBCL, Exp, Female tissue:FFPE tumor; genotype:Female; treatment:Exp; disease state:DLBCL SMR41
GSM8172575 SMR43, DLBCL, HIVneg, Male tissue:FFPE tumor; genotype:Male; treatment:HIVneg; disease state:DLBCL SMR43
GSM8172576 SMR45, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR45
GSM8172577 SMR46, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR46
GSM8172578 SMR48, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR48
GSM8172579 SMR50, DLBCL, Naive, Female tissue:FFPE tumor; genotype:Female; treatment:Naive; disease state:DLBCL SMR50
GSM8172580 SMR51, DLBCL, Naive, Male tissue:FFPE tumor; genotype:Male; treatment:Naive; disease state:DLBCL SMR51
GSM8172581 SMR52, DLBCL, HIVneg, Female tissue:FFPE tumor; genotype:Female; treatment:HIVneg; disease state:DLBCL SMR52
GSM8172582 SMR54, DLBCL, Exp, Male tissue:FFPE tumor; genotype:Male; treatment:Exp; disease state:DLBCL SMR54
GSM8172583 SMR55, DLBCL, HIVneg, Female tissue:FFPE tumor; genotype:Female; treatment:HIVneg; disease state:DLBCL SMR55
GSM8172584 SMR56, EBV+ DLBCL, Exp, Female tissue:FFPE tumor; genotype:Female; treatment:Exp; disease state:EBV+ DLBCL SMR56
Platform GPL24676  : Illumina NovaSeq 6000 (Homo sapiens)
Literature 38781015  
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xCell Plot
* p<0.05 ** p<0.01