HIV Target gene Detail Information

> IFT140 Gene Search Result


Gene Information
Gene Name IFT140
Gene ID 9742
Gene Full Name intraflagellar transport 140
Gene Alias CED5|MZSDS|PKD9|RP80|SRTD9|WDTC2|c305C8.4|c380F5.1|gs114
Transcripts ENSG00000187535
Virus HIV
Gene Type protein-coding
HPA Location Info Basal body;Nucleoplasm, Mitochondria;
Membrane Info Disease related genes, Human disease related genes, Predicted intracellular proteins
Uniport_ID Q96RY7
HGNC ID HGNC:29077
OMIM ID 614620
Summary This gene encodes one of the subunits of the intraflagellar transport (IFT) complex A. Intraflagellar transport is involved in the genesis, resorption and signaling of primary cilia. The primary cilium is a microtubule-based sensory organelle at the surface of most quiescent mammalian cells, that receives signals from its environment, such as the flow of fluid, light or odors, and transduces those signals to the nucleus. Loss of the corresponding protein in mouse results in renal cystic disease. [provided by RefSeq, Jun 2012]
Target gene [IFT140] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000526 chr16 97 246 53 396 View
4001116 chr16 35 150 26 211 View
4001811 chr16 77 14 39 130 View
4004209 chr16 45 2 0 47 View
4006804 chr16 1 17 4 22 View
4015046 chr16 0 1 0 1 View

Target gene [IFT140] related to Omics data
Data ID Experiment type Sample number Platform
GSE99737 RNA-seq 9 Illumina HiSeq 2500 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
GSE262621 RNA-seq 70 Illumina NovaSeq 6000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
GSE279982 Methylation profiling (Array) 576 Infinium MethylationEPIC
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE68028 MeDIP-chip 1 NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE165705 - IFT140 peak across samples

Peak Plot

> Dataset: GSE144329 - IFT140 peak across samples

Peak Plot

> Dataset: GSE220859 - IFT140 peak across samples

Peak Plot

> Dataset: GSE211651 - IFT140 peak across samples

Peak Plot

> Dataset: GSE100376 - IFT140 peak across samples

Peak Plot

> Dataset: GSE100266 - IFT140 peak across samples

Peak Plot

> Dataset: GSE165703 - IFT140 peak across samples

Peak Plot