HIV Target gene Detail Information

> KHDC4 Gene Search Result


Gene Information
Gene Name KHDC4
Gene ID 22889
Gene Full Name KH domain containing 4, pre-mRNA splicing factor
Gene Alias BLOM7|KIAA0907|SNORA80EHG
Transcripts ENSG00000132680
Virus HIV
Gene Type protein-coding
HPA Location Info Nucleoplasm;
Membrane Info Predicted intracellular proteins
Uniport_ID Q7Z7F0
HGNC ID HGNC:29145
OMIM ID 619370
Summary Enables RNA binding activity. Involved in mRNA splice site recognition. Located in cytoplasm; nucleoplasm; and spliceosomal complex. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [KHDC4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4001296 chr1 75 20 86 181 View
4006714 chr1 17 6 0 23 View
4008473 chr1 14 1 0 15 View
4010024 chr1 10 0 0 10 View
4011305 chr1 3 4 0 7 View

Target gene [KHDC4] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
GSE202410 scRNA-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
GSE228078 scRNA-seq 12 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE221688 - KHDC4 peak across samples

Peak Plot

> Dataset: GSE165705 - KHDC4 peak across samples

Peak Plot

> Dataset: GSE144329 - KHDC4 peak across samples

Peak Plot

> Dataset: GSE220859 - KHDC4 peak across samples

Peak Plot

> Dataset: GSE211651 - KHDC4 peak across samples

Peak Plot

> Dataset: GSE100376 - KHDC4 peak across samples

Peak Plot

> Dataset: GSE100266 - KHDC4 peak across samples

Peak Plot

> Dataset: GSE165703 - KHDC4 peak across samples

Peak Plot