Virus Dataset Detail

> Detail information for each sample

Dataset Information
Accession GSE202410
Status 2022/5/31
Title Single cell transcriptomics reveals HIV viral transcription and compartmentalized immune perturbations in the CNS of people with HIV despite antiretroviral treatment
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing;Other
Summary Single cell RNA sequencing of blood and CSF in people with HIV on ART compared to uninfected controls.
Samples
GSM ID Sample info Characteristics Description
GSM6119095 3013_v4_BLD disease status:Uninfected control; tissue:Blood; cell type:Peripheral blood mononuclear cells; ID:CTRL-13 -
GSM6119096 3013_v4_CSF disease status:Uninfected control; tissue:CSF; cell type:cerebrospinal fluid cells; ID:CTRL-13 -
GSM6119097 3029_base_BLD disease status:Uninfected control; tissue:Blood; cell type:Peripheral blood mononuclear cells; ID:CTRL-29 -
GSM6119098 3029_base_CSF disease status:Uninfected control; tissue:CSF; cell type:cerebrospinal fluid cells; ID:CTRL-29 -
GSM6119099 3031-base_CSF disease status:Uninfected control; tissue:CSF; cell type:cerebrospinal fluid cells; ID:CTRL-31 -
GSM6119100 3031-base_BLD disease status:Uninfected control; tissue:Blood; cell type:Peripheral blood mononuclear cells; ID:CTRL-31 -
GSM6119101 1044_V5_BLD disease status:HIV; tissue:Blood; cell type:Peripheral blood mononuclear cells; treatment:ART; ID:HIV-44 -
GSM6119102 1044_V5_CSF disease status:HIV; tissue:CSF; cell type:cerebrospinal fluid cells; treatment:ART; ID:HIV-44 -
GSM6119079 1037_V4_BLD disease status:HIV; tissue:Blood; cell type:Peripheral blood mononuclear cells; treatment:ART; ID:HIV-37 -
GSM6119080 1037_v4_CSF disease status:HIV; tissue:CSF; cell type:cerebrospinal fluid cells; treatment:ART; ID:HIV-37 -
GSM6119081 1070_base_BLD disease status:HIV; tissue:Blood; cell type:Peripheral blood mononuclear cells; treatment:ART; ID:HIV-70 -
GSM6119082 1070_base_CSF disease status:HIV; tissue:CSF; cell type:cerebrospinal fluid cells; treatment:ART; ID:HIV-70 -
GSM6119083 1071_base_BLD disease status:HIV; tissue:Blood; cell type:Peripheral blood mononuclear cells; treatment:ART; ID:HIV-71 -
GSM6119084 1071_base_CSF disease status:HIV; tissue:CSF; cell type:cerebrospinal fluid cells; treatment:ART; ID:HIV-71 -
GSM6119085 1072_base_BLD disease status:HIV; tissue:Blood; cell type:Peripheral blood mononuclear cells; treatment:ART; ID:HIV-72 -
GSM6119086 1072_base_CSF disease status:HIV; tissue:CSF; cell type:cerebrospinal fluid cells; treatment:ART; ID:HIV-72 -
GSM6119087 1073_base_BLD disease status:HIV; tissue:Blood; cell type:Peripheral blood mononuclear cells; treatment:ART; ID:HIV-73 -
GSM6119088 1073_base_CSF disease status:HIV; tissue:CSF; cell type:cerebrospinal fluid cells; treatment:ART; ID:HIV-73 -
GSM6119089 1075-base_BLD_GEX disease status:HIV; tissue:Blood; cell type:Peripheral blood mononuclear cells; treatment:ART; ID:HIV-75 1075_base_BLD_cite_matrix.mtx.gz;1075_base_BLD_cite_barcodes.tsv.gz;1075_base_BLD_cite_features.tsv.gz
GSM6119090 1075-base_BLD_ADT disease status:HIV; tissue:Blood; cell type:Peripheral blood mononuclear cells; treatment:ART; ID:HIV-75 1075_base_BLD_cite_matrix.mtx.gz;1075_base_BLD_cite_barcodes.tsv.gz;1075_base_BLD_cite_features.tsv.gz
GSM6119091 1075_base_CSF_GEX disease status:HIV; tissue:CSF; cell type:cerebrospinal fluid cells; treatment:ART; ID:HIV-75 1075_base_CSF_cite_matrix.mtx.gz;1075_base_CSF_cite_barcodes.tsv.gz;1075_base_CSF_cite_features.tsv.gz
GSM6119092 1075_base_CSF_ADT disease status:HIV; tissue:CSF; cell type:cerebrospinal fluid cells; treatment:ART; ID:HIV-75 1075_base_CSF_cite_matrix.mtx.gz;1075_base_CSF_cite_barcodes.tsv.gz;1075_base_BLD_cite_features.tsv.gz
GSM6119093 3009_V3_BLD disease status:Uninfected control; tissue:Blood; cell type:Peripheral blood mononuclear cells; ID:CTRL-09 -
GSM6119094 3009_V3_CSF disease status:Uninfected control; tissue:CSF; cell type:cerebrospinal fluid cells; ID:CTRL-09 -
Platform GPL20301  : Illumina HiSeq 4000 (Homo sapiens)
Literature 35801589  
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scRNA-seq UMAP