HIV Target gene Detail Information

> NUP188 Gene Search Result


Gene Information
Gene Name NUP188
Gene ID 23511
Gene Full Name nucleoporin 188
Gene Alias KIAA0169|SANDSTEF|hNup188
Transcripts ENSG00000095319
Virus HIV
Gene Type protein-coding
HPA Location Info Nucleoplasm;Nucleoli, Cytosol;
Membrane Info Disease related genes, Metabolic proteins, Potential drug targets, Predicted intracellular proteins, Transporters
Uniport_ID Q5SRE5
HGNC ID HGNC:17859
OMIM ID 615587
Summary The nuclear pore complex (NPC) is found on the nuclear envelope and forms a gateway that regulates the flow of proteins and RNAs between the cytoplasm and nucleoplasm. The NPC is comprised of approximately 30 distinct proteins collectively known as nucleoporins. Nucleoporins are pore-complex-specific glycoproteins which often have cytoplasmically oriented O-linked N-acetylglucosamine residues and numerous repeats of the pentapeptide sequence XFXFG. However, the nucleoporin protein encoded by this gene does not contain the typical FG repeat sequences found in most vertebrate nucleoporins. This nucleoporin is thought to form part of the scaffold for the central channel of the nuclear pore. [provided by RefSeq, Jan 2013]
Target gene [NUP188] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000321 chr9 273 88 185 546 View
4006839 chr9 22 0 0 22 View
4006850 chr9 8 14 0 22 View
4007014 chr9 21 0 0 21 View
4008840 chr9 2 12 0 14 View
4009100 chr9 2 11 0 13 View
4009285 chr9 12 0 0 12 View
4011119 chr9 6 1 0 7 View
4012420 chr9 4 1 0 5 View

Target gene [NUP188] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE99737 RNA-seq 9 Illumina HiSeq 2500 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
GSE262621 RNA-seq 70 Illumina NovaSeq 6000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
GSE279982 Methylation profiling (Array) 576 Infinium MethylationEPIC
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE221688 - NUP188 peak across samples

Peak Plot

> Dataset: GSE165705 - NUP188 peak across samples

Peak Plot

> Dataset: GSE144329 - NUP188 peak across samples

Peak Plot

> Dataset: GSE220859 - NUP188 peak across samples

Peak Plot

> Dataset: GSE211651 - NUP188 peak across samples

Peak Plot

> Dataset: GSE100376 - NUP188 peak across samples

Peak Plot

> Dataset: GSE100266 - NUP188 peak across samples

Peak Plot

> Dataset: GSE165703 - NUP188 peak across samples

Peak Plot